Job Description P29349 Confidence 99.96% Date Tue Jan 22 11:46:53 GMT 2013 Rank 51 Aligned Residues 160 % Identity 19% Template c2xp1A_ PDB info PDB header:transcription Chain: A: PDB Molecule:spt6; PDBTitle: structure of the tandem sh2 domains from antonospora locustae2 transcription elongation factor spt6 Resolution 2.20 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.		.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure																																																	.
Query SS confidence																																																	.
Query Sequence		R	W	F	H	P	T	I	S	G	I	E	A	E	K	L	L	Q	E	Q	G	F	D	G	S	F	L	A	R	L	S	S	S	N	P	G	A	F	T	L	S	V	R	R	G	N	E	V	.	T	H	I	K	I	Q	N	N	G	D	F	F	D	L	Y	G	G	E	K	F	A	T	L	P	E	L	V	Q	Y	Y	M	E
Query Conservation																																																	.
Alig confidence						.														.	.											.																	.													.
Template Conservation						.														.	.											.																														.
Template Sequence		P	L	F	K	.	N	F	N	V	T	E	S	E	N	Y	L	R	S	.	.	S	T	D	D	F	L	I	R	K	G	.	S	R	H	G	Y	C	V	L	V	I	K	F	A	S	D	V	F	V	H	M	K	I	E	E	H	S	E	H	Y	.	T	C	S	N	K	H	F	E	D	I	D	E	V	I	S	V	Y	V	R
Template Known Secondary structure		T	T			.														.	.	S	S									.	S	S	T	T										T	T											S	S			.			T	T				S	S								T
Template Predicted Secondary structure						.														.	.											.																														.
Template SS confidence
		793	.	.	.		.	.	.	800	.	.	.	.	.	.	.	.	.			810	.	.	.	.	.	.	.	.	.		820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.		.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.		.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure																																															.
Query SS confidence																																															.
Query Sequence		N	G	E	L	K	E	K	N	G	Q	A	I	E	L	K	Q	P	L	I	C	A	E	P	T	T	E	R	W	F	H	G	N	L	S	G	K	E	A	E	K	L	I	L	E	R	.	G	K	N	G	S	F	L	V	R	E	S	Q	S	K	P	G	D	F	V	L	S	V	R	T	D	D	K	V	T	H	V	M	I	R
Query Conservation																																															.
Alig confidence			.	.	.									.	.	.	.	.	.	.	.	.	.	.												.	.										.
Template Conservation			.	.	.									.	.	.	.	.	.	.	.	.	.	.												.	.
Template Sequence		P	.	.	.	I	L	R	N	L	K	S	I	.	.	.	.	.	.	.	.	.	.	.	K	A	H	A	K	Y	F	N	S	P	E	.	.	D	A	E	K	L	L	S	S	F	D	G	S	K	V	V	Y	A	F	Y	F	S	R	K	Y	P	G	K	L	T	F	A	Y	N	N	G	S	I	L	E	E	Y	I	G	V
Template Known Secondary structure			.	.	.									.	.	.	.	.	.	.	.	.	.	.			S	T	T	B		S		T	T	.	.	T	S						T			S	S	S									S	S	S	T	T								S	S	S
Template Predicted Secondary structure			.	.	.									.	.	.	.	.	.	.	.	.	.	.												.	.
Template SS confidence
		868				.	870	.	.	.	.	.	.												.	.	.	880	.	.	.	.	.	.	.			.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	Q	D	K	K	Y	D	V	G	G	G	E	S	F	G	T	L	S	E	L	I	D	H	Y	K	R
Query Conservation
Alig confidence		.	.							.
Template Conservation		.	.							.
Template Sequence		.	.	S	D	M	L	T	Y	.	N	N	S	T	F	K	D	I	D	S	F	V	A	Y	R	K	R
Template Known Secondary structure		.	.	S	S	S				.	T	T				S	S
Template Predicted Secondary structure		.	.							.
Template SS confidence
				932	.	.	.	.	.		.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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