Job Description P29349 Confidence 100.00% Date Tue Jan 22 11:46:53 GMT 2013 Rank 22 Aligned Residues 273 % Identity 40% Template c2c7sA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:receptor-type tyrosine-protein phosphatase kappa; PDBTitle: crystal structure of human protein tyrosine phosphatase2 kappa at 1.95a resolution Resolution 1.95 Å

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		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.				.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure																	.	.	.
Query SS confidence																	.	.	.
Query Sequence		R	I	T	A	A	G	I	N	A	R	V	E	Q	L	V	.	.	.	K	G	G	F	W	E	E	F	E	S	L	Q	Q	D	S	R	D	T	F	S	R	N	E	G	Y	K	Q	E	N	R	L	K	N	R	Y	R	N	I	L	P	Y	D	H	T	R	V	K	L	L	D	V	E	H	S	V	A	G	A	E	Y	I	N
Query Conservation																	.	.	.
Alig confidence																	.	.	.															.	.																																					.	.	.
Template Conservation																																		.	.																																					.	.	.
Template Sequence		A	I	R	V	A	D	L	L	Q	H	I	N	L	M	K	T	S	D	S	Y	G	F	K	E	E	Y	E	S	F	F	E	G	.	.	Q	S	A	S	W	D	V	A	K	K	D	Q	N	R	A	K	N	R	Y	G	N	I	I	A	Y	D	H	S	R	V	I	L	Q	P	V	D	.	.	.	P	S	S	D	Y	I	N
Template Known Secondary structure					G	G	G									T	T		S	S	S								T	S			S	.	.			S							S	G	G	G	G	G	G		S	S	T	T	S				G	G	G	B								.	.	.	G	G	G	G			S
Template Predicted Secondary structure																																		.	.																																					.	.	.
Template SS confidence
		867	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.			.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.				.	.	.	.	.	940	.
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	N	Y	I	R	L	P	T	D	G	D	L	Y	N	M	S	S	S	S	E	S	L	N	S	S	V	P	S	C	P	A	C	T	A	A	Q	T	Q	R	N	C	S	N	C	Q	L	Q	N	K	T	C	V	Q	C	A	V	K	S	A	I	L	P	Y	S	N	C	A	T	C	S	R	K	S	D	S	L	S	K	H	K
Query Conservation
Alig confidence							.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	N	Y	I	D	.	.	G	Y	Q	R	P	S	H	Y	I	A	T	Q	G	P	V	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							.	.		T	T													G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure							.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		944	.	.	.	.			.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.
		366	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	S	E	S	S	A	S	S	S	P	S	S	G	S	G	S	G	P	G	S	S	G	T	S	G	V	S	S	V	N	G	P	G	T	P	T	N	L	T	S	G	T	A	G	C	L	V	G	L	L	K	R	H	S	N	D	S	S	G	A	V	S	I	S	M	A	E	R	E	R	E	R	E	R	E	M	F	K	T	Y
Query Conservation
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		446	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	T	Q	G	C	L	L	T	Q	Q	V	N	T	V	T	D	F	W	N	M	V	W	Q	E	N	T	R	V	I	V	M	T	T	K	E	Y	E	R	G	K	E	K	C	A	R	Y	W	P	D	E	G	R	S	E	Q	F	G	H	A	R	I	Q	C	V	S	E	N	S	T	S	D	Y	T	L	R	E	F	L	V
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																																								.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.																																								.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	E	T	V	Y	D	F	W	R	M	I	W	Q	E	Q	S	A	C	I	V	M	V	T	N	L	V	E	V	G	R	V	K	C	Y	K	Y	W	P	D	D	.	.	T	E	V	Y	G	D	F	K	V	T	C	V	E	M	E	P	L	A	E	Y	V	V	R	T	F	T	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	G	G												T								S		S			T	T				S				S		S	S	.	.					T	T												S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																																								.	.
Template SS confidence
														965	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.			.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030
		526	.		.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.
Predicted Secondary structure				.
Query SS confidence				.
Query Sequence		S	W	.	R	D	Q	P	A	R	R	I	F	H	Y	H	F	Q	V	W	P	D	H	G	V	P	A	D	P	G	C	V	L	N	F	L	Q	D	V	N	T	R	Q	S	H	L	A	Q	A	G	E	K	P	G	P	I	C	V	H	C	S	A	G	I	G	R	T	G	T	F	I	V	I	D	M	I	L	D	Q	I	V
Query Conservation				.
Alig confidence				.																																									.	.	.	.	.	.
Template Conservation																																													.	.	.	.	.	.
Template Sequence		E	R	R	G	Y	N	E	I	R	E	V	K	Q	F	H	F	T	G	W	P	D	H	G	V	P	Y	H	A	T	G	L	L	S	F	I	R	R	V	K	L	S	N	P	.	.	.	.	.	.	P	S	A	G	P	I	V	V	H	C	S	A	G	A	G	R	T	G	C	Y	I	V	I	D	I	M	L	D	M	A	E
Template Known Secondary structure				T	T															S		S	S	S	S		S		S														S		.	.	.	.	.	.	T	T	S								S	S	S	S
Template Predicted Secondary structure																																													.	.	.	.	.	.
Template SS confidence
		1031	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.							.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.
		605	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	N	G	L	D	T	E	I	D	I	Q	R	T	I	Q	M	V	R	S	Q	R	S	G	L	V	Q	T	E	A	Q	Y	K	F	V	Y	Y	A	V	Q	H	Y	I	Q	T
Query Conservation
Alig confidence						.	.	.
Template Conservation						.	.	.
Template Sequence		R	E	G	V	.	.	.	V	D	I	Y	N	C	V	K	A	L	R	S	R	R	I	N	M	V	Q	T	E	E	Q	Y	I	F	I	H	D	A	I	L	E	A	C	L	C
Template Known Secondary structure				S		.	.	.														S	T	T	S	S		S
Template Predicted Secondary structure						.	.	.
Template SS confidence
		1105	.	.	.				.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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