Job Description Q8IR23 Confidence 40.01% Date Tue Jan 22 11:23:02 GMT 2013 Rank 336 Aligned Residues 135 % Identity 16% Template c4acrB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:glypican-1; PDBTitle: crystal structure of n-glycosylated, c-terminally truncated2 human glypican-1 Resolution 2.55 Å

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		695	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770
Predicted Secondary structure																																																																														.	.	.	.
Query SS confidence																																																																														.	.	.	.
Query Sequence		R	G	A	S	L	A	T	T	L	M	D	L	Y	M	R	T	E	C	S	G	F	L	Q	S	A	V	S	E	T	V	Q	R	I	L	E	S	K	Q	S	A	E	L	N	P	T	K	M	D	V	N	D	D	A	C	T	N	A	E	F	L	L	Q	I	L	D	L	V	T	Q	S	I	F	T	S	P	D	.	.	.	.
Query Conservation																																																																														.	.	.	.
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.
Template Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	G	Y	T	C	C	T	S	E	M	E	E	N	L	A	N	R	S	H	A	E	L	E	T	A	L	R	D	S	S	R	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	Q	A	M	L	A	T	Q	L	R	S	F	D	D	H	F	Q	H	L	L	N	D	S	E	R	T	L	Q	A	T	F	P
Template Known Secondary structure		S	S	S	B	S																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.																	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
						771	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.				.	.	.	.	810	.	.	.	.	.	.	.	.	.	820																				.	.	.	.
Predicted Secondary structure		.	.	.	.																																				.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.																																				.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	A	C	P	R	N	V	R	F	I	C	S	C	L	Q	K	A	V	M	A	K	W	P	T	E	R	L	V	R	T	R	V	V	S	G	F	.	.	.	I	F	L	R	L	L	C	P	A	L	L	N	P	R	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	G	L	V
Query Conservation		.	.	.	.																																				.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.																																				.	.	.							.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																		.	.
Template Sequence		G	A	F	G	E	L	Y	T	Q	N	A	R	A	F	R	D	L	Y	S	E	L	R	L	Y	Y	R	G	A	N	L	H	L	E	E	T	L	A	E	F	W	A	R	L	L	E	R	L	F	.	.	K	Q	L	H	P	Q	L	L	L	P	D	D	Y	L	D	C	L	G	K	Q	A	E	A	L	R	P	F	G	E	A
Template Known Secondary structure				S						T	T																T	T	S																					.	.					S	S	S				S	S														T	T	T	T
Template Predicted Secondary structure																																																		.	.
Template SS confidence
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.			.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
		825	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	E	T	P	P	M	A	A	T	R	S	L	V	M	V	A	K	C	L	Q	N	L	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	R	E	L	R	L	R	A	T	R	A	F	V	A	A	R	S	F	V	Q	G	L	G
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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