Job Description Q8IR23 Confidence 29.95% Date Tue Jan 22 11:23:02 GMT 2013 Rank 356 Aligned Residues 65 % Identity 15% Template c3qhsD_ PDB info PDB header:rna binding protein Chain: D: PDB Molecule:protein hfq; PDBTitle: crystal structure of full-length hfq from escherichia coli Resolution 2.85 Å

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		359	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	K	I	Y	A	T	L	R	E	C	R	D	Q	I	G	L	K	K	I	K	G	I	K	H	H	G	H	L	N	K	K	S	D	K	T	T	K	W	K	Q	L	Y	F	A	L	I	N	D	G	S	E	T	Q	L	C	F	Y	D	N	P	K	K	T	K	P	K	G	L	I	D	L	S	C
Query Conservation
Alig confidence																															.	.	.	.	.	.	.	.										.
Template Conservation																															.	.	.	.	.	.	.	.										.
Template Sequence		Q	D	P	F	L	N	A	L	R	R	E	R	V	P	V	S	I	Y	L	V	N	G	I	K	L	Q	G	Q	I	.	.	.	.	.	.	.	.	E	S	F	D	Q	F	V	I	L	.	L	K	N	T	V	S	Q	M	V	Y	K	H	A	I	S	T	V	V	P	S	R	P	V	S	H	H	S
Template Known Secondary structure												T	T								S	S	S								.	.	.	.	.	.	.	.					S	S				.			S	S	S						G	G	G							S	S
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.										.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.									.	.	.	40	.	.	.	.	.		.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions