Job Description Q8IR23 Confidence 98.95% Date Tue Jan 22 11:23:02 GMT 2013 Rank 231 Aligned Residues 115 % Identity 18% Template c3nsjA_ PDB info PDB header:immune system Chain: A: PDB Molecule:perforin-1; PDBTitle: the x-ray crystal structure of lymphocyte perforin Resolution 2.75 Å

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		484	.	.	.	.	.	490	.	.	.	.	.	.	.			.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.			.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.		.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.																						.	.																					.
Query SS confidence																.	.																						.	.																					.
Query Sequence		C	D	S	Q	L	S	R	A	Q	K	K	V	S	R	.	.	L	R	E	L	R	C	L	N	L	H	V	L	E	A	H	R	L	P	F	K	L	.	.	V	P	H	P	Y	C	S	I	S	L	N	Q	V	K	V	G	K	T	R	V	.	K	I	A	P	E	P	V	W	E	E	E	F	V	L	D	D	V	P	P	D
Query Conservation																.	.																						.	.																					.
Alig confidence																.	.																						.	.																.					.
Template Conservation																																																								.
Template Sequence		C	E	C	Q	D	S	K	V	T	N	Q	D	C	C	P	R	Q	R	G	L	A	H	L	V	V	S	N	F	R	A	E	H	L	W	G	D	Y	T	T	A	T	D	A	Y	L	K	V	F	F	G	G	Q	E	F	.	R	T	G	V	V	W	N	N	N	N	P	R	W	T	D	K	M	D	F	E	N	V	L	L	S
Template Known Secondary structure					S		T	T	T	B		G	G	G		B	S	S	T	T													S				S	S		S											T	T				.					B		S		S	S		B												T	T
Template Predicted Secondary structure																																																								.
Template SS confidence
		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.		.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.
		559		560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.									.	.	.	590	.	.	.	.	.	.	.	.	.
Predicted Secondary structure			.																												.	.	.	.	.	.	.	.
Query SS confidence			.																												.	.	.	.	.	.	.	.
Query Sequence		V	.	V	S	L	T	I	T	L	I	S	R	G	K	R	G	K	D	S	E	V	A	E	L	T	I	D	L	S	.	.	.	.	.	.	.	.	S	L	K	N	G	Q	E	T	E	G	W	Y	Q
Query Conservation			.																												.	.	.	.	.	.	.	.
Alig confidence			.																												.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	G	G	P	L	R	V	Q	V	W	D	A	D	Y	G	W	D	D	D	L	L	G	S	C	D	R	S	P	H	S	G	F	H	E	V	T	C	E	L	N	H	G	R	V	K	F	S	Y	H	A
Template Known Secondary structure		T													S	S	S														S										S	S	S
Template Predicted Secondary structure
Template SS confidence
		473	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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