Job Description Q8IR23 Confidence 27.07% Date Tue Jan 22 11:23:02 GMT 2013 Rank 368 Aligned Residues 52 % Identity 13% Template c3hsbB_ PDB info PDB header:rna binding protein/rna Chain: B: PDB Molecule:protein hfq; PDBTitle: crystal structure of ymah (hfq) from bacillus subtilis in complex with2 an rna aptamer Resolution 2.20 Å

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		359	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	K	I	Y	A	T	L	R	E	C	R	D	Q	I	G	L	K	K	I	K	G	I	K	H	H	G	H	L	N	K	K	S	D	K	T	T	K	W	K	Q	L	Y	F	A	L	I	N	D	G	S	E	T	Q	L	C	F	Y	D	N
Query Conservation
Alig confidence																															.	.	.	.	.	.	.	.
Template Conservation																															.	.	.	.	.	.	.	.
Template Sequence		Q	D	Q	F	L	N	Q	I	R	K	E	N	T	Y	V	T	V	F	L	L	N	G	F	Q	L	R	G	Q	V	.	.	.	.	.	.	.	.	K	G	F	D	N	F	T	V	L	L	E	S	E	G	K	Q	Q	L	I	Y	K	H	A
Template Known Secondary structure												T	T								T	T	S								.	.	.	.	.	.	.	.					S	S							T	T							G	G	G
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.									.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions