Job Description Q8IR23 Confidence 99.94% Date Tue Jan 22 11:23:02 GMT 2013 Rank 13 Aligned Residues 165 % Identity 16% Template c2xp1A_ PDB info PDB header:transcription Chain: A: PDB Molecule:spt6; PDBTitle: structure of the tandem sh2 domains from antonospora locustae2 transcription elongation factor spt6 Resolution 2.20 Å

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		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure																																																										.
Query SS confidence																																																										.
Query Sequence		P	A	I	I	A	P	P	E	S	E	W	Y	H	G	R	L	D	R	Y	S	A	E	S	R	L	R	G	S	S	K	L	G	S	Y	L	V	R	E	S	D	R	K	P	G	S	Y	V	L	S	Y	Y	G	R	T	G	I	.	N	H	F	R	I	T	A	V	C	G	D	F	Y	I	G	G	R	Q	F	I	S	L	S
Query Conservation																																																										.
Alig confidence									.	.	.				.														.	.											.																	.
Template Conservation									.	.	.				.														.	.											.
Template Sequence		P	R	F	Y	K	H	P	.	.	.	L	F	K	.	N	F	N	V	T	E	S	E	N	Y	L	R	S	.	.	S	T	D	D	F	L	I	R	K	G	.	S	R	H	G	Y	C	V	L	V	I	K	F	A	S	D	V	F	V	H	M	K	I	E	E	H	S	E	H	Y	T	C	S	N	K	H	F	E	D	I	D
Template Known Secondary structure			G	G	G	G	S	T	.	.	.	T			.														.	.	S	S									.	S	S	T	T										T	T											S	S					T	T				S	S
Template Predicted Secondary structure									.	.	.				.														.	.											.
Template SS confidence
		787	.	.	790	.	.	.				.	.	.		.	.	.	800	.	.	.	.	.	.	.	.	.			810	.	.	.	.	.	.	.	.	.		820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	V	G	Y	Y	T	S	C	S	D	L	L	K	R	E	R	L	A	I	P	V	A	P	P	E	P	V	N	D	K	K	R	V	V	A	I	L	P	Y	T	K	M	P	E	T	D	E	L	S	F	Q	K	G	D	I	F	F	V	H	N	D	M	G	D	G	W	L	W	V	T	A	H	R	T	G	E	Q	G	M
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	V	I	S	V	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		860	.	.	.	.	.
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.			.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure																																									.	.
Query SS confidence																																									.	.
Query Sequence		I	F	R	E	L	V	D	D	L	D	V	S	I	D	P	N	T	V	F	P	W	F	H	P	N	C	T	K	N	E	A	V	D	M	L	V	K	A	G	.	.	P	G	S	F	L	V	R	P	S	D	N	S	P	G	D	Y	S	L	F	F	H	I	N	N	Q	I	Q	R	F	R	I	E	K	K	G	V	R	Y	L
Query Conservation																																									.	.
Alig confidence		.	.	.	.	.																							.	.											.	.																																				.	.
Template Conservation		.	.	.	.	.																							.	.																																																.	.
Template Sequence		.	.	.	.	.	V	R	P	I	L	R	N	L	K	S	I	K	A	H	A	K	Y	F	N	S	P	E	.	.	D	A	E	K	L	L	S	S	F	D	G	S	K	V	V	Y	A	F	Y	F	S	R	K	Y	P	G	K	L	T	F	A	Y	N	N	G	S	I	L	E	E	Y	I	G	V	S	D	M	.	.	L	T
Template Known Secondary structure		.	.	.	.	.														S	T	T	B		S		T	T	.	.	T	S						T			S	S	S									S	S	S	T	T								S	S	S									S	S	S	.	.
Template Predicted Secondary structure		.	.	.	.	.																							.	.																																																.	.
Template SS confidence
							866	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.			.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.			.	.
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	G	G	R	T	F	E	C	L	D	A	V	I	N	R	Y	R	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	N	N	S	T	F	K	D	I	D	S	F	V	A	Y	R	K	R
Template Known Secondary structure			T	T				S	S
Template Predicted Secondary structure
Template SS confidence
		937	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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