Job Description Q1WWC9 Confidence 94.42% Date Tue Jan 22 11:33:30 GMT 2013 Rank 480 Aligned Residues 213 % Identity 16% Template c3vkhA_ PDB info PDB header:motor protein Chain: A: PDB Molecule:dynein heavy chain, cytoplasmic; PDBTitle: x-ray structure of a functional full-length dynein motor domain Resolution 3.80 Å

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		434	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	M	N	A	Q	K	E	R	E	Q	E	R	V	L	K	Q	K	A	H	N	T	Q	L	N	V	E	L	S	T	L	N	E	K	I	K	E	L	S	Q	R	I	C	D	T	R	A	G	V	T	N	V	K	T	V	I	D	G	M	R	T	Q	R	D	T	S	M	S	E	M	S	Q	L	K	A	R	I	K	E	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	H	Y	L	D	F	I	N	Q	V	V	L	L	I	N	E	K	R	D	Q	L	E	E	E	Q	L	H	L	N	I	G	L	K	K	L	R	D	T	E	A	Q	V	K	D	L	Q	V	S	L	A	Q	K	N	R	E	L	D	V	K	N	E	Q	A	N	Q	K	L	K	Q	M	V	Q	D	Q	Q	A	A	E	I	K
Template Known Secondary structure																																																																		T													T
Template Predicted Secondary structure
Template SS confidence
		3258	.	3260	.	.	.	.	.	.	.	.	.	3270	.	.	.	.	.	.	.	.	.	3280	.	.	.	.	.	.	.	.	.	3290	.	.	.	.	.	.	.	.	.	3300	.	.	.	.	.	.	.	.	.	3310	.	.	.	.	.	.	.	.	.	3320	.	.	.	.	.	.	.	.	.	3330	.	.	.	.	.	.	.
		514	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.
Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	A	K	L	L	Q	L	T	Q	E	R	A	K	W	E	A	K	S	K	A	S	G	A	A	L	G	G	E	N	A	Q	Q	E	Q	L	N	A	A	F	A	H	K	Q	L	I	I	N	Q	I	K	D	K	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.	.	.
Template Sequence		Q	K	D	A	.	.	.	R	E	L	Q	V	Q	L	D	V	R	N	K	E	I	A	V	Q	K	V	K	A	Y	A	D	L	E	K	A	E	P	A	I	I	E	A	Q	E	A	V	S	T	I	K	K	K	H	L	D	E	I	K	S	L	P	K	P	P	T	P	V	K	L	A	M	E	A	V	C	L	M	L	G	G
Template Known Secondary structure				T	S	.	.	.	G	G	G	G	G	T	T	T						T											G	G	G	T	S	T											S													S	S																T	T
Template Predicted Secondary structure						.	.	.
Template SS confidence
		3338	.	3340	.				.	.	.	.	.	.	.	.	3350	.	.	.	.	.	.	.	.	.	3360	.	.	.	.	.	.	.	.	.	3370	.	.	.	.	.	.	.	.	.	3380	.	.	.	.	.	.	.	.	.	3390	.	.	.	.	.	.	.	.	.	3400	.	.	.	.	.	.	.	.	.	3410	.	.	.	.
																																																																												567	.	.	570	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	N	I	S	K	E
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	K	L	E	W	A	D	I	R	K	K	I	M	E	P	N	F	I	T	S	I	I	N	Y	D	T	K	K	M	M	T	P	K	I	R	E	A	I	T	K	G	Y	L	E	D	P	G	F	D	Y	E	T	V	N	R	A	S	K	A	C	G	P	L	V	K	W	A	T	A	Q	T	Y	Y	S	E	I	L	K	L	K
Template Known Secondary structure												G	G	G		T	T							T			T	T				T	T	T									T	T	T		T	T											T	T																T	T				S
Template Predicted Secondary structure
Template SS confidence
		3415	.	.	.	.	3420	.	.	.	.	.	.	.	.	.	3430	.	.	.	.	.	.	.	.	.	3440	.	.	.	.	.	.	.	.	.	3450	.	.	.	.	.	.	.	.	.	3460	.	.	.	.	.	.	.	.	.	3470	.	.	.	.	.	.	.	.	.	3480	.	.	.	.	.	.	.	.	.	3490	.	.	.	.
		573	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	E	S	K	K	E	D	I	N	T	N	D	V	Q	M	S	E	L	K	A	E	L	S	A	L	I	T	K	C	E	D	L	Y	K	E	Y	D	V	Q	R	T	S	V	L	E	L	K	Y	N	R	K	N	E	T	S	V	S	S	A	W	D	T	G	S	S	S	A	W	E	E	T	G	T	T	V	T	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	D	E	I	V	A	T	I	T	A	L	E	K	S	I	A	T	Y	K	E	E	Y	A	T	L	I	R	E	T	E	Q	I	K	T	E	S	S	K	V	K	N	K	V	D	R	S	I	A	L	L	D	N	L	N	S	E	R	G	R	W	E	Q	Q	S	E	N	F	N	T	Q	M	S	T	V	V	G	D
Template Known Secondary structure		G	G	G																T	T	S
Template Predicted Secondary structure
Template SS confidence
		3515	.	.	.	.	3520	.	.	.	.	.	.	.	.	.	3530	.	.	.	.	.	.	.	.	.	3540	.	.	.	.	.	.	.	.	.	3550	.	.	.	.	.	.	.	.	.	3560	.	.	.	.	.	.	.	.	.	3570	.	.	.	.	.	.	.	.	.	3580	.	.	.	.	.	.	.	.	.	3590	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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