Job Description Q1WWC9 Confidence 96.16% Date Tue Jan 22 11:33:30 GMT 2013 Rank 440 Aligned Residues 334 % Identity 9% Template c1sjjB_ PDB info PDB header:contractile protein Chain: B: PDB Molecule:actinin; PDBTitle: cryo-em structure of chicken gizzard smooth muscle alpha-2 actinin Resolution 20.00 Å

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		336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	Y	V	K	G	Q	A	E	L	D	R	R	R	K	I	M	E	D	Q	Q	R	K	E	R	E	E	R	E	R	K	E	R	E	E	A	D	K	R	E	K	A	R	L	E	A	E	R	K	Q	Q	E	E	L	E	R	Q	L	Q	R	Q	R	E	I	E	M	E	K	E	E	Q	R	K	R	E	L	E	A	K	E	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	N	E	Q	L	M	E	D	Y	E	K	L	A	S	D	L	L	E	W	I	R	R	T	I	P	W	L	E	N	R	A	P	E	N	T	M	Q	A	M	Q	Q	K	L	E	D	F	R	D	Y	R	R	L	H	K	P	P	K	V	Q	E	K	C	Q	L	E	I	N	F	N	T	L	Q	T	K	L	R	L	S	N	R
Template Known Secondary structure																																			S	S																		T																						T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
		416	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.							.	.	.
Predicted Secondary structure																																																																									.	.	.	.	.	.
Query SS confidence																																																																									.	.	.	.	.	.
Query Sequence		A	R	K	E	L	E	K	Q	R	Q	Q	E	W	E	Q	A	R	I	A	E	M	N	A	Q	K	E	R	E	Q	E	R	V	L	K	Q	K	A	H	N	T	Q	L	N	V	E	L	S	T	L	N	E	K	I	K	E	L	S	Q	R	I	C	D	T	R	A	G	V	T	N	V	K	.	.	.	.	.	.	T	V	I
Query Conservation																																																																									.	.	.	.	.	.
Alig confidence																																																																									.	.	.	.	.	.
Template Conservation
Template Sequence		P	A	F	M	P	S	E	G	K	M	V	S	D	I	N	N	A	W	G	G	L	E	Q	A	E	K	G	Y	E	E	W	L	L	N	E	I	R	R	L	E	R	L	D	H	L	A	E	K	F	R	Q	K	A	S	I	H	E	S	W	T	D	G	K	E	A	M	L	Q	Q	K	D	Y	E	T	A	T	L	S	E	I
Template Known Secondary structure							S	S	T	T		T	T	T												T	T	T																																T	T	T	T						T	S		T	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.
		490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	M	R	T	Q	R	D	T	S	M	S	E	M	S	Q	L	K	A	R	I	K	E	Q	N	A	K	L	L	Q	L	T	Q	E	R	A	K	W	E	A	K	S	K	A	S	G	A	A	L	G	G	E	N	A	Q	Q	E	Q	L	N	A	A	F	A	H	K	Q	L	I	I	N	Q	I	K	D	K	V	E	N	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	A	L	L	K	K	H	E	A	F	E	S	D	L	A	A	H	Q	D	R	V	E	Q	I	A	A	I	A	Q	E	L	N	E	L	D	Y	Y	D	S	P	S	V	N	A	R	C	Q	K	I	C	D	Q	W	D	N	L	G	A	L	T	Q	K	R	R	E	A	L	E	R	T	E	K	L	L	E	T	I	D	Q	L
Template Known Secondary structure																T	T																	T	T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		432	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.
		570	.	.	.	.	.	.																								.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	K	E	I	E	S	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	E	D	I	N	T	N	D	V	Q	M	S	E	L	K	A	E	L	S	A	L	I	T	K	C	E	D	L	Y	K	E	Y	D	V	Q	R	T	S	V	L	E	L	K	Y	N	R	K	N	E	T
Query Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	L	E	Y	A	K	R	A	A	P	F	N	N	W	M	E	G	A	M	E	D	L	Q	D	T	F	I	V	H	T	I	E	E	I	Q	G	L	T	T	A	H	E	Q	F	K	A	T	L	P	D	A	D	K	E	R	Q	A	I	L	G	I	H	N	E	V	S	K	I	V	Q	T	Y	H	V	N	M	A	G	T	N
Template Known Secondary structure									T	T	T	T	T										T	T						S	S																	T																								T	T	T			S		S
Template Predicted Secondary structure
Template SS confidence
		512	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.
		627	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	V	S	S	A	W	D	T	G	S	S	S	A	W	E	E	T	G	T	T	V	T	D	P	Y	A	V	A	S	N	D	I	S	A	L	A	A	P	A	V	D	L	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	Y	T	T	I	T	P	Q	E	I	N	G	K	W	E	H	V	R	Q	L	V	P	R	R	D	Q	A	L	M	E	E	H	A	R	Q	Q	Q	N	E	R	L	R	K
Template Known Secondary structure		S	S		S																													T	T
Template Predicted Secondary structure
Template SS confidence
		592	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions