Job Description Q1WWC9 Confidence 99.77% Date Tue Jan 22 11:33:30 GMT 2013 Rank 15 Aligned Residues 178 % Identity 17% Template c1mv3A_ PDB info PDB header:endocytosis/exocytosis Chain: A: PDB Molecule:myc box dependent interacting protein 1; PDBTitle: nmr structure of the tumor suppressor bin1: alternative2 splicing in melanoma and interaction with c-myc Resolution UNK

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		904	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	V	S	Q	I	N	T	Q	S	K	T	Q	S	S	E	P	A	E	S	Y	S	R	P	M	S	R	T	S	S	M	T	P	G	M	R	A	K	R	S	E	I	A	Q	V	I	A	P	Y	E	A	T	S	T	E	Q	L	S	L	T	R	G	Q	L	I	M	I	R	K	K	T	D	S	G	W	W	E	G	E	L	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	A	A	T	P	E	I	R	V	N	H	E	P	E	P	A	G	G	A	T	P	G	A	T	L	P	K	S	P	S	Q	L	R	K	G	P	P	V	P	P	P	P	K	H	T	P	S	K	E	V	K	Q	E	Q	I	L	S	L	F	E	D	T	F	V	P	E	I	S	V	T	T	P	S	Q	P	A	E	A	S	E
Template Known Secondary structure																																	S										S
Template Predicted Secondary structure
Template SS confidence
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
		984	.	.	.	.	.	990	.	.																	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	K	G	R	R	R	Q	I	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	F	P	A	T	Y	V	K	V	L	Q	G	G	R	N	S	G	R	N	T	P	V	S	G	S	R	I	E	M	T	E	Q	I	L	D	K	V	I	A	L	Y	P	Y	K	A	Q	N	D	D	E	L	S	F	D	K
Query Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	A	G	G	T	Q	P	A	A	G	A	Q	E	P	G	E	T	A	A	S	E	A	A	S	S	S	L	P	A	V	V	V	E	T	F	P	A	T	V	N	G	T	V	E	G	G	S	G	A	G	R	L	D	L	P	P	G	F	M	F	K	V	Q	A	Q	H	D	Y	T	A	T	D	T	D	E	L	Q	L	K	A
Template Known Secondary structure					S	S																																															S	S			T	T								S	S		B				S	T	T				B		S
Template Predicted Secondary structure
Template SS confidence
		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.
		1048	.	1050	.	.	.	.						.	.	.	.	.	1060	.	.	.	.											.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.
Predicted Secondary structure									.	.	.	.	.											.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.											.	.	.	.	.	.	.	.	.	.
Query Sequence		D	D	I	I	S	V	L	.	.	.	.	.	G	R	D	E	P	E	W	W	R	G	.	.	.	.	.	.	.	.	.	.	E	L	N	G	L	S	G	L	F	P	S	N	Y	V	G	P	F
Query Conservation									.	.	.	.	.											.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.											.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	D	V	V	L	V	I	P	F	Q	N	P	E	E	Q	D	E	G	W	L	M	G	V	K	E	S	D	W	N	Q	H	K	K	L	E	K	C	R	G	V	F	P	E	N	F	T	E	R	V
Template Known Secondary structure		S									S		G	G	G	S		T	T												T	G	G	G	G	G	G	T						S	T	T
Template Predicted Secondary structure
Template SS confidence
		433	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions