Job Description Q8IPW2 Confidence 99.93% Date Tue Jan 22 11:34:03 GMT 2013 Rank 36 Aligned Residues 100 % Identity 28% Template c1ka6A_ PDB info PDB header:immune system Chain: A: PDB Molecule:sh2 domain protein 1a; PDBTitle: sap/sh2d1a bound to peptide n-py Resolution UNK

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		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.		.	.	.	.	.	.							370	.	.	.	.	.	.	.
Predicted Secondary structure																																																													.							.	.	.	.	.	.
Query SS confidence																																																													.							.	.	.	.	.	.
Query Sequence		L	A	G	K	S	W	Y	Y	G	A	I	T	R	S	Q	C	D	T	V	L	N	G	H	G	H	D	G	D	F	L	I	R	D	S	E	T	N	M	G	D	Y	S	V	S	L	K	A	P	G	R	N	K	H	F	R	V	H	V	E	.	Q	N	M	Y	C	I	.	.	.	.	.	.	G	Q	R	K	F	H	S	L
Query Conservation																																																													.							.	.	.	.	.	.
Alig confidence																																																													.							.	.	.	.	.	.
Template Conservation
Template Sequence		M	D	A	V	A	V	Y	H	G	K	I	S	R	E	T	G	E	K	L	L	L	A	T	G	L	D	G	S	Y	L	L	R	D	S	E	S	V	P	G	V	Y	C	L	C	V	L	Y	H	G	Y	I	Y	T	Y	R	V	S	Q	T	E	T	G	S	W	S	A	E	T	A	P	G	V	H	K	R	Y	F	R	K	I
Template Known Secondary structure						S	S	B			S																T	T								S	S	S	T	T								S	S	S											T	T	S							S	T	T	S						S	S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	Q	L	V	D	H	Y	Q	R	A	P	I	Y	T	N	K	Q	G	E	K	L	Y	L	V	R	S	L	P	K	A	N	G
Query Conservation
Alig confidence												.	.	.	.	.
Template Conservation												.	.	.	.	.
Template Sequence		K	N	L	I	S	A	F	Q	K	P	.	.	.	.	.	D	Q	G	I	V	I	P	L	Q	Y	P	V	E	K	K	S	S
Template Known Secondary structure								T	T	S	S	.	.	.	.	.		S	S	S	S	S				S	B			S	S
Template Predicted Secondary structure												.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90						.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions