 |
| Job Description | Q8IPW2 | | Confidence | 99.91% | Date | Tue Jan 22 11:34:03 GMT 2013 |
| Rank | 75 | Aligned Residues | 125 |
| % Identity | 26% | Template | c1a81E_ |
| PDB info |
PDB header:complex (transferase/peptide) | Chain: E: PDB Molecule:syk kinase; |
PDBTitle: crystal structure of the tandem sh2 domain of the syk kinase bound to2 a dually tyrosine-phosphorylated itam
|
| Resolution | 3.00 Å |
|
 |
|   |   |
276 | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | |
. | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . |
| Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
| . |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|  |
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
G | G | G | N | D | S | M | E | R | R | N | E | G | N | K | P | A | A | Q | S | S | G | Q | P | I | E | R | P | N | L | A | G | K | S | W | Y | Y | G | A | I | T | R | S | Q | C | D | T | V | L | N | G | H | G | . |
H | D | G | D | F | L | I | R | D | S | E | T | N | M | G | D | Y | S | V | S | L | K | A | P | G | R |
| Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |
|   |   |
|   |   |   |
|   |   |   |   | . |   |   |
|   |
|
|
|
|   |
|   |   |   |   |   |   |   |   |
|
|   |   |   |   |   |   |
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation |   |
  |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |
|   |
|   |   |
|
|   |   |
|   |   |   |   |   |   |   |
|   |
|
|
|
|   |
| . |   |   |   |   |   |   |   |
|
|   |   |   |   |   |   |
| Template Sequence |   |
V | C | L | L | K | K | P | F | N | R | P | Q | G | V | Q | P | K | T | P | Q | L | E | K | L | I | A | T | T | A | H | E | K | M | P | W | F | H | G | K | I | S | R | E | E | S | E | Q | I | V | L | I | G | S | K | T | N | G | K | F | L | I | R | A | R | . |
D | N | N | G | S | Y | A | L | C | L | L | H | E | G | K |
| Template Known Secondary structure |   |
S | S |
|
|
| S | B |
|
|
|
| T | T |
|
|
|
|
|
|
|  |  |  |  |  |  |  | T | S | G | G | G |
| T | T |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  | S | S |
|
|
| T | T |
|  |  |  |  |  |
| . | S | S | S | S |  |  |  |  |  |  |  |  | T | T |  |
| Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |
| . |
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | |
. | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . |
|   |
|   |   |
355 | . | . | . | . | 360 | . | . | . | |
. | . | . | . | . | . | 370 | . | . | |
. | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . |
| Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
| . |
|
|  |  |  |  |
|
|  | . |  |
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
| Query SS confidence |   |
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
N | K | H | F | R | V | H | V | E | . |
Q | N | M | Y | C | I | G | Q | R | . |
K | F | H | S | L | D | Q | L | V | D | H | Y | Q | R | A | P | I | Y | T | N | K | Q | G | E | K | L | Y | L | V | R | S | L | P | K |
| Query Conservation |   |
  |   |
|   |   |
|   |   |   | . |   |   |   |   |   |   |   |   |   | . |   |
|   |   |   |   |   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |
| Alig confidence |   |
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation |   |
|   |
|   |   |
|   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |
|
|   |   |
|
|   |   |
|   |   |   | . | . | . | . | . |   |   |   |
|   |   |   |
|   |   |
|   |   |   |
| Template Sequence |   |
V | L | H | Y | R | I | D | K | D | K | T | G | K | L | S | I | P | E | G | K | K | F | D | T | L | W | Q | L | V | E | H | Y | S | Y | K | . |
. |
. |
. |
. |
A | D | G | L | L | R | V | L | T | V | P | C | Q | K |
| Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |
| T | T | S |
|  |  |
| T | T | S |
|
| B | S |
|  |  |  |  |  |  |  |  | T | T |
| . | . | . | . | . |
| T | T | S | S | S |
|
|
| S | B |
|
|
|
| Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|  |  |
|
|  |  |  |  |  |  |  |  |  |  |
| . | . | . | . | . |
|
|
|
|
|  |  |
|
|
|  |  |  |
|
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
213 | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | |
|
|
|
|
. | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . |
|   |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
|
|
|