Job Description Q24145 Confidence 98.09% Date Tue Jan 22 11:35:34 GMT 2013 Rank 409 Aligned Residues 137 % Identity 19% Template c3tdvB_ PDB info PDB header:transferase Chain: B: PDB Molecule:gentamicin resistance protein; PDBTitle: structure of the gdp complex of wild-type aminoglycoside 2'-2 phosphotransferase-iiia Resolution 2.20 Å

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		658	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.				.	.	.	.	.	.	730	.	.	.	.
Predicted Secondary structure																																																																				.	.	.
Query SS confidence																																																																				.	.	.
Query Sequence		E	P	E	K	L	V	L	D	R	E	I	G	H	G	E	F	G	S	V	H	S	G	W	L	L	R	K	S	G	A	G	E	E	S	R	L	E	V	A	I	K	M	L	S	D	E	H	S	N	K	Q	E	F	L	R	E	A	S	V	M	M	R	L	E	H	K	.	.	.	C	I	V	R	L	I	G	I	A	K	G
Query Conservation																																																																				.	.	.
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.									.																								.	.	.
Template Conservation																								.	.	.	.	.	.	.	.	.	.	.	.									.
Template Sequence		P	D	I	S	I	Q	S	V	E	S	L	G	E	G	F	R	N	Y	A	I	L	V	.	.	.	.	.	.	.	.	.	.	.	.	N	G	D	W	V	F	R	F	.	P	K	S	Q	Q	G	A	D	E	L	N	K	E	I	Q	L	L	P	L	L	V	G	C	V	K	V	N	I	P	Q	Y	V	Y	I	G	K	R
Template Known Secondary structure		T	T	S			S									S	S							.	.	.	.	.	.	.	.	.	.	.	.	T	T	T						.		S	S																		G	G	G		S	S	B
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.									.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.													.	40	.	.	.	.	.	.		.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		735	.			.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.
Predicted Secondary structure				.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence				.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	M	.	.	L	M	M	V	Q	E	L	A	P	L	G	S	M	L	Q	Y	I	L	D	H	G	H	E	I	T	A	N	A	E	L	K	V	W	A	S	Q	I	A	C	G	M	H	Y	L	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation				.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.																						.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.	.	.
Template Sequence		S	D	G	N	P	F	V	G	Y	R	K	V	Q	G	Q	I	L	G	E	D	G	M	A	V	F	.	.	.	.	P	D	D	A	K	D	R	L	A	L	Q	L	A	E	F	M	N	E	L	S	A	F	P	V	E	T	A	I	S	A	G	V	P	V	T	N	L	K	N	K	I	L	L	L	S	E	A	V	E	D	Q
Template Known Secondary structure		T	T	S											S										T		.	.	.	.																						S								T	T			B
Template Predicted Secondary structure																											.	.	.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.					.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
																															782	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.					.	.	.	.	.	.	.	.	810	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	Q	H	F	V	H	R	D	L	A	A	R	N	I	L	L	T	A	R	H	.	.	.	.	Q	A	K	I	S	D	F	G	M	S
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.
Template Conservation
Template Sequence		V	F	P	L	L	D	E	S	L	R	D	Y	L	T	L	R	F	Q	S	Y	M	T	H	P	V	Y	T	R	Y	T	P	R	L	I	H	G	D	L	S	P	D	H	F	L	T	N	L	N	S	R	Q	T	P	L	T	G	I	I	D	F	G	D	A
Template Known Secondary structure		T	G	G	G	S																															S				G	G	G					T	T		S	S		S								T	T
Template Predicted Secondary structure
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions