Job Description Q24145 Confidence 99.95% Date Tue Jan 22 11:35:34 GMT 2013 Rank 341 Aligned Residues 208 % Identity 15% Template c3jxiA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:vanilloid receptor-related osmotically activated channel PDBTitle: crystal structure of the chicken trpv4 ankyrin repeat domain Resolution 2.30 Å

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		51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.								.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.			100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.																											.	.																	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.																											.	.																	.	.	.	.	.	.
Query Sequence		C	Q	G	E	V	C	H	Y	Q	V	R	R	H	G	G	E	D	A	F	F	S	I	D	.	.	.	.	.	.	.	D	K	V	Q	T	K	I	L	H	G	L	D	T	L	V	D	Y	Y	Q	Q	A	A	N	G	L	P	.	.	T	K	L	T	V	P	L	I	R	D	L	P	P	H	N	T	.	.	.	.	.	.
Query Conservation																									.	.	.	.	.	.	.																											.	.																	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.																											.	.																	.	.	.	.	.	.
Template Conservation
Template Sequence		F	N	R	P	I	L	F	D	I	V	S	R	G	S	P	D	G	L	E	G	L	L	S	F	L	L	T	H	K	K	R	L	T	D	E	E	F	R	E	P	S	T	G	K	T	C	L	P	K	A	L	L	N	L	S	A	G	R	N	D	T	I	P	I	L	L	D	I	A	E	K	T	G	N	M	R	E	F	I	N
Template Known Secondary structure														T		G	G	G	G	T	T									T			T	T	S	G	G	G	S		T	T	T										T	S		B	T	T	B		T												T	T							T
Template Predicted Secondary structure
Template SS confidence
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
							116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.															150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	R	S	H	G	V	T	N	L	L	H	R	A	T	S	K	N	E	S	K	V	V	F	E	L	L	K	C	G	Y	R	N	F	D	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	N	Q	D	G	Q	T	A	L	H	L	A	A	L	H	S	D	E	D	I	L	K	H	L	L	N	A
Query Conservation		.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.																													.						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																			.
Template Sequence		S	P	F	R	D	V	Y	Y	R	G	Q	T	A	L	H	I	A	I	E	R	R	C	K	H	Y	V	E	L	L	V	E	K	G	.	A	D	V	H	A	Q	A	R	G	R	F	F	Q	P	K	D	E	G	G	Y	F	Y	F	G	E	L	P	L	S	L	A	A	C	T	N	Q	P	H	I	V	H	Y	L	T	E	N
Template Known Secondary structure				B			S	S			S	B									T	T											T	T	.			T	T									S	S	S					S			S		S	S								T	T
Template Predicted Secondary structure																																			.
Template SS confidence
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.		.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
		177				.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure			.	.	.
Query SS confidence			.	.	.
Query Sequence		K	.	.	.	V	Q	V	N	S	S	D	S	F	G	C	Q	P	L	H	Y	A	A	R	S	K	P	A	S	F	I	R	T	L	I	S	A	Q	A	N	V	Q	G	R	N	I	D	N	G	Y	V	P	L	H	E	A	A	K	H	G	N	L	E	A	V	Q	E	L	L	L	A	E	A	P	P	L	P	R	T	S	S
Query Conservation			.	.	.
Alig confidence			.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	H	K	Q	A	D	L	R	R	Q	D	S	R	G	N	T	V	L	H	A	L	V	A	I	A	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	T	R	E	N	T	K	F	V	T	K	M	Y	D	L	L	L	I	K	C	A	K	L	F	P	D	T	N	L	E	A	L	L	N	N	D
Template Known Secondary structure		S	S					T	T				T	T	S													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S																							T	T			G	G	G				T	T
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.																			320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	E	F	P	F	D	L	A	K	E	A	G	Q	T	A	V	E	E	F	L	L	N	Y	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	L	S	P	L	M	M	A	A	K	T	G	K	I	G	I	F	Q	H	I	I	R	R	E
Template Known Secondary structure		S										T	T
Template Predicted Secondary structure
Template SS confidence
		356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions