Job Description Q24145 Confidence 99.90% Date Tue Jan 22 11:35:34 GMT 2013 Rank 363 Aligned Residues 161 % Identity 22% Template c2nyjA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:transient receptor potential cation channel PDBTitle: crystal structure of the ankyrin repeat domain of trpv1 Resolution 3.20 Å

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		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140								.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.				160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.																				.	.	.																									.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.																				.	.	.																									.	.	.	.	.	.
Query Sequence		V	T	N	L	L	H	R	A	T	S	K	N	E	S	K	V	V	F	E	L	L	.	.	.	.	.	.	.	K	C	G	Y	R	N	F	D	A	K	N	Q	D	G	Q	T	A	L	H	.	.	.	L	A	A	L	H	S	D	E	D	I	L	K	H	L	L	N	A	K	V	Q	V	N	S	S	.	.	.	.	.	.
Query Conservation																							.	.	.	.	.	.	.																				.	.	.																									.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.																				.	.	.																									.	.	.	.	.	.
Template Conservation
Template Sequence		D	R	R	S	I	F	D	A	V	A	Q	S	N	C	Q	E	L	E	S	L	L	P	F	L	Q	R	S	K	K	R	L	T	D	S	E	F	K	D	P	E	T	G	K	T	C	L	L	K	A	X	L	N	L	H	N	G	Q	N	D	T	I	A	L	L	L	D	V	A	R	K	T	D	S	L	K	Q	F	V	N	A
Template Known Secondary structure													T		S	T	T	T	T	T												T	T	S	G	G	G	S		T	T	T													B	T	T	B													T	T	T		S					T
Template Predicted Secondary structure
Template SS confidence
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
							184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	D	S	F	G	C	Q	P	L	H	Y	A	A	R	S	K	P	A	S	F	I	R	T	L	I	S	A	Q	A	N	V	Q	G	R	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	Y	T	D	S	Y	Y	K	G	Q	T	A	L	H	I	A	I	E	R	R	N	X	T	L	V	T	L	L	V	E	N	G	A	D	V	Q	A	A	A	N	G	D	F	F	K	K	T	K	F	G	E	L	P	L	S	L	A	A	C	T	N	Q	L	A	I	V	K	F	L	L	Q	N	S	W	Q	P	A	D	I	S
Template Known Secondary structure		B			S	S	S	S		S		B								T	T										T	T	T			T	T					S	G	G	G	S	S						S								T	T										T		S	S					T	T
Template Predicted Secondary structure
Template SS confidence
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
																				218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	D	N	G	Y	V	P	L	H	E	A	A	K	H	G	N	L	E	A	V	Q	E	L	L	L	A	E	A	P	P	L	P	R	T	S	S	G	E	F	P	F	D	L	A	K	E	A	G	Q	T	A	V	E	E	F	L	L	N	Y	K	L	P
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	R	D	S	V	G	N	T	V	L	H	A	L	V	E	V	A	D	N	T	V	D	N	T	K	F	V	T	S	X	Y	N	E	I	L	I	L	G	A	K	L	H	P	T	L	K	L	E	E	I	T	N	R	K	G	L	T	P	L	A	L	A	A	S	S	G	K	I	G	V	L	A	Y	I	L	Q	R	E	I	H
Template Known Secondary structure					T	T										T	T																									T		T	T			G	G	G				S	S												T												T	T	T
Template Predicted Secondary structure
Template SS confidence
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.
		280
Predicted Secondary structure
Query SS confidence
Query Sequence		P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		359

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions