Job Description Q24145 Confidence 100.00% Date Tue Jan 22 11:35:34 GMT 2013 Rank 129 Aligned Residues 243 % Identity 27% Template c2h6dA_ PDB info PDB header:signaling protein,transferase Chain: A: PDB Molecule:5'-amp-activated protein kinase catalytic subunit PDBTitle: protein kinase domain of the human 5'-amp-activated protein2 kinase catalytic subunit alpha-2 (ampk alpha-2 chain) Resolution 1.85 Å

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		660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.					.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.
Predicted Secondary structure																																																	.	.	.	.
Query SS confidence																																																	.	.	.	.
Query Sequence		E	K	L	V	L	D	R	E	I	G	H	G	E	F	G	S	V	H	S	G	W	L	L	R	K	S	G	A	G	E	E	S	R	L	E	V	A	I	K	M	L	S	D	E	H	S	N	.	.	.	.	K	Q	E	F	L	R	E	A	S	V	M	M	R	L	E	H	K	C	I	V	R	L	I	G	I	A	K	G	E
Query Conservation																																																	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.																				.	.	.	.
Template Conservation																							.	.	.	.	.	.	.
Template Sequence		G	H	Y	V	L	G	D	T	L	G	V	G	T	F	G	K	V	K	I	G	E	.	.	.	.	.	.	.	H	Q	L	T	G	H	K	V	A	V	K	I	L	N	R	Q	K	I	R	S	L	D	V	V	G	K	I	K	R	E	I	Q	N	L	K	L	F	R	H	P	H	I	I	K	L	Y	Q	V	I	S	T	P
Template Known Secondary structure		T	T											S	S								.	.	.	.	.	.	.		T	T	T																	T	T														T				T	T	B										S
Template Predicted Secondary structure																							.	.	.	.	.	.	.
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.								.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		736		.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.
Predicted Secondary structure			.
Query SS confidence			.
Query Sequence		M	.	L	M	M	V	Q	E	L	A	P	L	G	S	M	L	Q	Y	I	L	D	H	G	H	E	I	T	A	N	A	E	L	K	V	W	A	S	Q	I	A	C	G	M	H	Y	L	E	S	Q	H	F	V	H	R	D	L	A	A	R	N	I	L	L	T	A	R	H	Q	A	K	I	S	D	F	G	M	S	R	S	L
Query Conservation			.
Alig confidence			.																							.	.
Template Conservation																										.	.
Template Sequence		T	D	F	F	M	V	M	E	Y	V	S	G	G	E	L	F	D	Y	I	C	K	H	G	R	.	.	V	E	E	M	E	A	R	R	L	F	Q	Q	I	L	S	A	V	D	Y	C	H	R	H	M	V	V	H	R	D	L	K	P	E	N	V	L	L	D	A	H	M	N	A	K	I	A	D	F	G	L	S	N	M	M
Template Known Secondary structure		S											S		B										S	.	.																									S	S						G	G	G					T	T	S									G	G	G
Template Predicted Secondary structure																										.	.
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110			.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		815	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.		.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.
Predicted Secondary structure																															.
Query SS confidence																															.
Query Sequence		R	P	G	S	T	E	Y	Q	F	T	Q	G	G	R	W	P	I	R	W	Y	A	P	E	S	F	N	L	G	I	.	F	S	H	A	S	D	V	W	S	F	G	V	T	I	W	E	M	F	S	L	G	A	P	P	Y	G	E	I	S	N	V	D	A	I	K	L	V	D	S	G	E	R	L	P	Q	P	N	L	C	P
Query Conservation																															.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.																				.																						.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.																						.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	D	A	A	P	E	V	I	S	G	R	L	Y	A	G	P	E	V	D	I	W	S	C	G	V	I	L	Y	A	L	L	C	.	G	T	L	P	F	D	D	E	H	V	P	T	L	F	K	K	I	R	G	G	V	.	F	Y	I	P	E	Y	L	N
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T	G	G	G	T	T	S																						.	S	S		S	S			S	S													.					T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.																						.
Template SS confidence
																			165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.		.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.		.	.	220	.	.	.	.	.
		894	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.			.	.	920	.	.	.		.	.	.	.	.	.	930
Predicted Secondary structure																										.	.							.
Query SS confidence																										.	.							.
Query Sequence		A	Y	I	Y	A	V	M	Q	S	C	W	K	E	R	P	K	D	R	P	T	F	V	Y	L	.	.	T	E	F	F	A	R	.	D	P	D	Y	Q	N	L
Query Conservation																										.	.							.
Alig confidence																										.	.							.
Template Conservation
Template Sequence		R	S	V	A	T	L	L	M	H	M	L	Q	V	D	P	L	K	R	A	T	I	K	D	I	R	E	H	E	W	F	K	Q	D	L	P	S	Y	L	F	P
Template Known Secondary structure												T		S	S	G	G	G	S									S					T	T			G	G	G
Template Predicted Secondary structure
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions