Job Description Q24145 Confidence 99.96% Date Tue Jan 22 11:35:34 GMT 2013 Rank 330 Aligned Residues 224 % Identity 19% Template c2fo1E_ PDB info PDB header:gene regulation/signalling protein/dna Chain: E: PDB Molecule:lin-12 protein; PDBTitle: crystal structure of the csl-notch-mastermind ternary2 complex bound to dna Resolution 3.12 Å

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		51	.	.	.	.	.	.	.	.	60	.	.		.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.								.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
Predicted Secondary structure														.																																														.	.	.	.	.	.	.
Query SS confidence														.																																														.	.	.	.	.	.	.
Query Sequence		C	Q	G	E	V	C	H	Y	Q	V	R	R	.	H	G	G	E	D	A	F	F	S	I	D	D	K	V	Q	T	K	I	L	H	G	L	D	T	L	V	D	Y	Y	Q	Q	A	A	N	G	L	P	T	K	L	T	V	P	L	I	.	.	.	.	.	.	.	R	D	L	P	P	H	N	T	R	S	H	G	V	T	N
Query Conservation														.																																														.	.	.	.	.	.	.
Alig confidence														.																		.	.																											.	.	.	.	.	.	.
Template Conservation																																.	.
Template Sequence		N	E	E	S	P	I	K	L	H	T	E	A	A	G	S	Y	A	I	T	E	P	I	T	R	E	S	V	N	I	I	.	.	D	P	R	H	N	R	T	V	L	H	W	I	A	S	N	S	S	A	E	K	S	E	D	L	I	V	H	E	A	K	E	C	I	A	A	G	A	D	V	N	A	X	D	C	D	E	N	T
Template Known Secondary structure															S	S	S				S			S	T	T	T	T	T	T		.	.			S	S											T	T			S			T	T												T				T	T				T	T	S
Template Predicted Secondary structure																																.	.
Template SS confidence
		951	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980			.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	L	H	R	A	T	S	K	N	E	S	K	V	V	F	E	L	L	K	C	G	Y	R	N	F	D	A	K	N	Q	D	G	Q	T	A	L	H	L	A	A	L	H	S	D	E	D	I	L	K	H	L	L	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.
Template Sequence		P	L	X	L	A	V	L	A	R	R	R	R	L	V	A	Y	L	X	K	A	G	.	A	D	P	T	I	Y	N	K	S	E	R	S	A	L	H	Q	A	A	A	N	R	D	F	G	X	X	V	Y	X	L	N	S	T	K	L	K	G	D	I	E	E	L	D	R	N	G	X	T	A	L	X	I	V	A	H	N	E	G
Template Known Secondary structure										T											T	T	.			S					T	T											T	T									T	T	S						T	T	S				T	T	S										S		S
Template Predicted Secondary structure																							.
Template SS confidence
		1097	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.		.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.
																						176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	K	V	Q	V	N	S	S	D	S	F	G	C	Q	P	L	H	Y	A	A	R	S	K	P	A	S	F	I	R	T	L	I	S	A	Q	A	N	V	Q	G	R	N	I	D	N	G	Y	V	P	L	H	E	A	A	K	H	G	N	L	E
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	D	Q	V	A	S	A	K	L	L	V	E	K	G	A	K	V	D	Y	D	G	A	A	R	K	D	S	E	K	Y	K	G	R	T	A	L	H	Y	A	A	Q	V	S	N	X	P	I	V	K	Y	L	V	G	E	K	G	S	N	K	D	K	Q	D	E	D	G	K	T	P	I	X	L	A	A	Q	E	G	R	I	E
Template Known Secondary structure		T	T												T			S	S			S	G	G	G	T	S	S	S	S						T						S	S													S				T	T				T	T												T
Template Predicted Secondary structure
Template SS confidence
		1176	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	Q	E	L	L	L	A	E	A	P	P	L	P	R	T	S	S	G	E	F	P	F	D	L	A	K	E	A	G	Q	T	A	V	E	E	F	L	L	N	Y	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	V	X	Y	L	I	Q	Q	G	A	S	V	E	A	V	D	A	T	D	H	T	A	R	Q	L	A	Q	A	N	N	H	H	N	I	V	D	I	F	D	R	C	R
Template Known Secondary structure									T	T			S	S				S	S	S										T	T										T	T
Template Predicted Secondary structure
Template SS confidence
		1256	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions