Job Description Q24145 Confidence 99.94% Date Tue Jan 22 11:35:34 GMT 2013 Rank 349 Aligned Residues 208 % Identity 22% Template c2f37B_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:transient receptor potential cation channel PDBTitle: crystal structure of the ankyrin repeat domain of human2 trpv2 Resolution 1.70 Å

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		51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.								.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.														.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure																									.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		C	Q	G	E	V	C	H	Y	Q	V	R	R	H	G	G	E	D	A	F	F	S	I	D	.	.	.	.	.	.	.	D	K	V	Q	T	K	I	L	H	G	L	D	T	L	V	D	Y	Y	Q	Q	A	A	N	G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	P	T	K	L	T	V	P	L	I	R	D	L
Query Conservation																									.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	D	R	D	R	L	F	N	A	V	S	R	G	V	P	E	D	L	A	G	L	P	E	Y	L	S	K	T	S	K	Y	L	T	D	S	E	Y	T	E	G	S	T	G	K	T	C	L	X	K	A	V	L	N	L	K	D	G	V	N	A	C	I	L	P	L	L	Q	I	D	R	D	S	G	N	P	Q	P	L	V	N
Template Known Secondary structure														T		G	G	G	G	T	T									T			T	T	S	G	G	G	S	B	T	T	T	T	B									T		B	T	T	B		T	T												T		S	S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.														.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.
Query SS confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.
Query Sequence		P	P	H	N	T	R	S	H	G	V	T	N	L	L	H	R	A	T	S	K	N	E	S	K	V	V	F	E	L	L	K	C	G	Y	R	N	F	D	A	K	N	Q	D	.	.	.	.	.	.	.	.	.	.	.	.	.	G	Q	T	A	L	H	L	A	A	L	H	S	D	E	D	I	L	K	H	L	L	N	.	.
Query Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.
Alig confidence																																			.										.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.
Template Conservation																																			.
Template Sequence		A	Q	C	T	D	D	Y	Y	R	G	H	S	A	L	H	I	A	I	E	K	R	S	L	Q	C	V	K	L	L	V	E	N	G	.	A	N	V	H	A	R	A	C	G	R	F	F	Q	K	G	Q	G	T	C	F	Y	F	G	E	L	P	L	S	L	A	A	C	T	K	Q	W	D	V	V	S	Y	L	L	E	N	P
Template Known Secondary structure			B			S	T	T	T	T	T		B								T	T											T	T	.			T	T					S	G	G	G		T	T	S	S	S	S			S		S	S								T	T												S
Template Predicted Secondary structure																																			.
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.		.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
			176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	A	K	V	Q	V	N	S	S	D	S	F	G	C	Q	P	L	H	Y	A	A	R	S	K	P	A	S	F	I	R	T	L	I	S	A	Q	A	N	V	Q	G	R	N	I	D	N	G	Y	V	P	L	H	E	A	A	K	H	G	N	L	E	A	V	Q	E	L	L	L	A	E	A	P	P	L	P	R	T	S	S	G
Query Conservation		.
Alig confidence		.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		H	Q	P	A	S	L	Q	A	T	D	S	Q	G	N	T	V	L	H	A	L	V	X	I	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	N	S	A	E	N	I	A	L	V	T	S	X	Y	D	G	L	L	Q	A	G	A	R	L	C	P	T	V	Q	L	E	D	I	R	N	L	Q	D
Template Known Secondary structure		S					T	T				T	T	S												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S																							S	T	T			G	G	G				T	T	S
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.																			.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	F	P	F	D	L	A	K	E	A	G	Q	T	A	V	E	E	F	L	L	N	Y	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	T	P	L	K	L	A	A	K	E	G	K	I	E	I	F	R	H	I	L	Q	R	E
Template Known Secondary structure											T	T												T
Template Predicted Secondary structure
Template SS confidence
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions