Job Description Q24145 Confidence 99.93% Date Tue Jan 22 11:35:34 GMT 2013 Rank 354 Aligned Residues 168 % Identity 28% Template c1oy3D_ PDB info PDB header:dna binding protein Chain: D: PDB Molecule:transcription factor inhibitor i-kappa-b-beta; PDBTitle: crystal structure of an ikbbeta/nf-kb p65 homodimer complex Resolution 2.05 Å

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		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.				.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure																																				.	.	.																																								.	.	.	.
Query SS confidence																																				.	.	.																																								.	.	.	.
Query Sequence		H	N	T	R	S	H	G	V	T	N	L	L	H	R	A	T	S	K	N	E	S	K	V	V	F	E	L	L	K	C	G	Y	R	N	.	.	.	F	D	A	K	N	Q	D	G	Q	T	A	L	H	L	A	A	L	H	S	D	E	D	I	L	K	H	L	L	N	A	K	V	Q	V	N	S	S	D	S	.	.	.	.
Query Conservation																																				.	.	.																																								.	.	.	.
Alig confidence																																	.			.	.	.																																								.	.	.	.
Template Conservation																																	.
Template Sequence		F	G	Y	V	T	E	D	G	D	T	A	L	H	L	A	V	I	H	Q	H	E	P	F	L	D	F	L	L	G	F	S	.	A	G	H	E	Y	L	D	L	Q	N	D	L	G	Q	T	A	L	H	L	A	A	I	L	G	E	A	S	T	V	E	K	L	Y	A	A	G	A	G	V	L	V	A	E	R	G	G	H	T
Template Known Secondary structure							T	T											T	T													.	T	T	S	G	G	G	G				T	T	S											T											T	T			S	S				T	T	S
Template Predicted Secondary structure																																	.
Template SS confidence
		51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.		.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
																																											186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	G	C	Q	P	L	H	Y	A	A	R	S	K	P	A	S	F	I	R	T	L	I	S	A	Q	A	N	V	Q	G	R	N	I	D	N	G	Y	V	P
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	L	H	L	A	C	R	V	R	A	H	T	C	A	C	V	L	L	Q	P	R	P	S	H	P	R	D	A	D	E	D	W	R	L	Q	L	E	A	E	N	Y	D	G	H	T	P	L	H	V	A	V	I	H	K	D	A	E	M	V	R	L	L	R	D	A	G	A	D	L	N	K	P	E	P	T	C	G	R	T	P
Template Known Secondary structure							T	T	T	T									S	S	S			S	S								G	G	G	G	T	T				T	T	S										T	T												T			T	T				T	T	T
Template Predicted Secondary structure
Template SS confidence
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	H	E	A	A	K	H	G	N	L	E	A	V	Q	E	L	L	L	A	E	A	P	P	L	P	R	T	S	S	G	E	F	P	F	D	L	A	K	E	A	G	Q	T	A	V	E	E	F	L	L	N	Y	K	L	P	P	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	H	L	A	V	E	A	Q	A	A	S	V	L	E	L	L	L	K	A	G	A	D	P	T	A	R	M	Y	G	G	R	T	P	L	G	S	A	L	L	R	P	N	P	I	L	A	R	L	L	R	A	H	G	A	P	E	P
Template Known Secondary structure								T	T											T	T			T	T				T	T	S									T	S	S											T	T
Template Predicted Secondary structure
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions