Job Description Q9VX18 Confidence 99.30% Date Tue Jan 22 11:47:38 GMT 2013 Rank 100 Aligned Residues 84 % Identity 23% Template c3or8A_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt6; PDBTitle: a tandem sh2 domain in transcription elongation factor spt6 Resolution 1.60 Å

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		839	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.		890	.	.	.	.	.	.	.	.			.	900	.	.	.	.	.	.				.	.	.	910	.	.
Predicted Secondary structure																																																					.										.	.									.	.	.
Query SS confidence																																																					.										.	.									.	.	.
Query Sequence		K	V	K	D	Y	G	W	Y	W	G	P	L	S	S	E	A	A	E	K	V	L	S	S	E	P	D	G	S	F	I	V	R	D	S	S	D	D	H	Y	I	F	S	L	S	F	K	L	N	N	C	V	.	R	H	V	R	I	E	Q	D	Q	.	.	G	T	F	S	F	G	S	Y	.	.	.	A	K	F	K	S	Q
Query Conservation																																																					.										.	.									.	.	.
Alig confidence											.																																										.										.	.									.	.	.
Template Conservation											.
Template Sequence		R	V	I	N	H	P	Y	Y	F	.	P	F	N	G	K	Q	A	E	D	Y	L	R	S	K	E	R	G	D	F	V	I	R	Q	S	S	R	G	D	D	H	L	A	I	T	W	K	L	D	K	D	L	F	Q	H	V	D	I	Q	E	L	E	K	E	N	P	L	A	L	G	K	V	L	V	V	E	G	Q	R	Y	H
Template Known Secondary structure							T	T			.												T	T	S		T	T								S	S		T	T										T	T											S		S	S	T	T	S			S					T	T				S
Template Predicted Secondary structure											.
Template SS confidence
		2	.	.	.	.	.	.	.	10		.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		913	.	.	.	.	.	.	920	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	I	T	E	F	I	E	K	A	V	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	L	D	Q	I	I	V	E	Y	L	Q
Template Known Secondary structure		S								T
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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