Job Description Q9W4A9 Confidence 100.00% Date Wed Feb 13 11:40:50 GMT 2013 Rank 11 Aligned Residues 184 % Identity 30% Template c2ovjA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:rac gtpase-activating protein 1; PDBTitle: the crystal structure of the human rac gtpase activating protein 12 (racgap1) mgcracgap. Resolution 1.49 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	T	T	M	V	Q	L	E	P	H	H	Q	I	P	F	V	V	R	R	C	V	E	E	V	E	A	R	G	M	L	Q	E	G	I	Y	R	V	S	G	F	A	D	E	I	E	A	L	K	L	A	L	D	R	E	G	E	K	T	D	M	S	E	T	A	Y	G	N	V	N	V	I	A	G	T	L	K	L	Y	L
Query Conservation
Alig confidence												.																																																							.	.
Template Conservation												.																																																							.	.
Template Sequence		M	L	A	D	F	V	S	Q	T	S	.	P	M	I	P	S	I	V	V	H	C	V	N	E	I	E	Q	R	G	L	T	E	T	G	L	Y	R	I	S	G	C	D	R	T	V	K	E	L	K	E	K	F	L	R	V	K	T	V	P	L	L	S	K	V	D	.	.	D	I	H	A	I	C	S	L	L	K	D	F	L
Template Known Secondary structure			G	G	G	G			S	S	S	.	S																	T	T	T	S	T	T	T	T	T	S																T	T		S				G	G	G			.	.
Template Predicted Secondary structure												.																																																							.	.
Template SS confidence
		350	.	.	.	.	.	.	.	.	.		360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.			.	.	.	.	.	.	420	.	.	.	.	.	.
		385	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	L	P	V	P	L	I	T	F	Q	A	Y	P	S	F	M	A	A	G	R	T	G	K	Q	A	E	Q	R	Q	L	M	A	E	A	V	R	R	L	P	P	A	H	H	S	C	L	Q	Y	M	L	E	H	L	K	R	V	A	S	H	Y	A	V	N	K	M	N	E	H	N	L	A	T	V	F	A	P	T	L	I
Query Conservation
Alig confidence																																																													.
Template Conservation																																																													.
Template Sequence		R	N	L	K	E	P	L	L	T	F	R	L	N	R	A	F	M	E	A	A	E	I	T	D	E	D	N	S	I	A	A	M	Y	Q	A	V	G	E	L	P	Q	A	N	R	D	T	L	A	F	L	M	I	H	L	Q	R	V	A	Q	.	S	P	H	T	K	M	D	V	A	N	L	A	K	V	F	G	P	T	I	V
Template Known Secondary structure			T	S	S	S		T	T		T	T	T											S	S														T	S																					.		T	T	S																T
Template Predicted Secondary structure																																																													.
Template SS confidence
		427	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.		.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.
		465	.	.	.	.								470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.
Predicted Secondary structure							.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.
Query Sequence		A	T	P	Q	H	.	.	.	.	.	.	.	M	T	N	L	T	E	E	I	F	M	L	S	S	L	I	T	H	C	K	T	I	F	A
Query Conservation							.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	H	A	V	P	N	P	D	P	V	T	M	L	Q	D	I	K	R	Q	P	K	V	V	E	R	L	L	S	L	P	L	E	Y	W	S
Template Known Secondary structure				S	S	S	S																							S
Template Predicted Secondary structure
Template SS confidence
		506	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions