Job Description Q9W4A9 Confidence 100.00% Date Wed Feb 13 11:40:50 GMT 2013 Rank 1 Aligned Residues 393 % Identity 44% Template c1xa6A_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:beta2-chimaerin; PDBTitle: crystal structure of the human beta2-chimaerin Resolution 3.20 Å

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		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	V	W	K	P	E	L	Y	K	L	Q	L	E	A	P	A	P	C	P	L	R	C	Q	R	T	L	P	L	P	P	A	K	S	T	A	E	A	V	E	A	N	N	L	A	G	R	L	Y	G	S	E	Y	H	G	L	M	G	H	L	E	A	E	Q	L	L	A	N	A	R	D	G	S	Y	F	V	R	R	S	P	Q
Query Conservation
Alig confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Template Sequence		P	I	W	K	S	Y	L	Y	Q	L	Q	Q	E	A	P	R	P	K	R	I	I	C	P	R	E	V	E	N	R	P	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	Y	G	R	E	F	H	G	I	I	S	R	E	Q	A	D	E	L	L	G	.	G	V	E	G	A	Y	I	L	R	E	S	Q	R
Template Known Secondary structure			S	S											S					B					S	S				S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S		S	S																.	S		T	T	B							S	S
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.																.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.		.	.	.	.	.	.	.	80	.	.	.	.	.
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	D	G	Y	Y	T	L	S	L	R	F	N	K	R	P	K	H	Y	K	L	L	Y	K	P	G	V	G	H	Y	L	R	G	Q	D	K	R	F	D	T	V	H	D	M	V	A	D	G	L	I	N	F	H	M	Q	L	H	A	S	P	I	I	Q	Q	I	N	Q	Q	T	K	N	C	Y	Q	Q	S	P	Y	M	T	L
Query Conservation
Alig confidence																									.	.	.								.																																.	.
Template Conservation																									.	.	.								.																																.	.
Template Sequence		Q	P	G	C	Y	T	L	A	L	R	F	G	N	Q	T	L	N	Y	R	L	F	H	D	.	.	.	G	K	H	F	V	G	E	.	K	R	F	E	S	I	H	D	L	V	T	D	G	L	I	T	L	Y	I	E	T	K	A	A	E	Y	I	S	K	M	T	.	.	T	N	P	I	Y	E	H	I	G	Y	A	T	L
Template Known Secondary structure		S	T	T									T	T										S	.	.	.	S	S				S	S	.	S					S	S															S								T	T	.	.	S	S			G	G	G	S	S	S	S	S	S
Template Predicted Secondary structure																									.	.	.								.																																.	.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.				.	110	.	.	.	.	.		.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.			.	.	.	150	.	.	.	.	.	.	.	.	.
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	G	R	K	L	R	A	L	S	N	E	L	G	K	A	A	A	K	E	S	K	E	S	P	A	E	E	K	E	Q	K	Q	E	E	P	P	P	P	A	V	D	P	M	P	L	V	Y	E	K	P	H	H	F	K	V	H	T	F	K	G	L	N	W	C	E	F	C	A	N	F	L	W	G	F	T	A	Q	G	V	K
Query Conservation
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	R	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	K	T	H	N	F	K	V	H	T	F	R	G	P	H	W	C	E	Y	C	A	N	F	M	W	G	L	I	A	Q	G	V	R
Template Known Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												S	S			B		T	T	T			B			T	T	T	T
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		160	.	.																																													.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	E	A	C	G	F	V	A	H	S	K	C	S	E	L	V	P	P	K	C	V	P	D	L	K	R	I	R	G	V	F	G	T	D	L	T	T	M	V	Q	L	E	P	H	H	Q	I	P	F	V	V	R	R	C	V	E	E	V	E	A	R	G	M	L	Q	E	G	I	Y	R	V	S	G	F	A	D	E	I	E	A
Query Conservation
Alig confidence																																															.
Template Conservation																																															.
Template Sequence		C	S	D	C	G	L	N	V	H	K	Q	C	S	K	H	V	P	N	D	C	Q	P	D	L	K	R	I	K	K	V	Y	C	C	D	L	T	T	L	V	K	A	H	N	T	Q	.	R	P	M	V	V	D	I	C	I	R	E	I	E	A	R	G	L	K	S	E	G	L	Y	R	V	S	G	F	T	E	H	I	E	D
Template Known Secondary structure			S	S	S				B		T	G	G	G	T	T	S		S				T	T	T	T	S					T	T	S										T		S	.	S														S		S	S	S	T	T	T	T	T	S
Template Predicted Secondary structure																																															.
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.		.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	L	A	L	D	R	E	G	E	K	T	D	M	S	E	T	A	Y	G	N	V	N	V	I	A	G	T	L	K	L	Y	L	R	L	L	P	V	P	L	I	T	F	Q	A	Y	P	S	F	M	A	A	G	R	T	G	K	Q	A	E	Q	R	Q	L	M	A	E	A	V	R	R	L	P	P	A	H	H	S	C	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	K	M	A	F	D	R	D	G	E	K	A	D	I	S	A	N	V	Y	P	D	I	N	I	I	T	G	A	L	K	L	Y	F	R	D	L	P	I	P	V	I	T	Y	D	T	Y	S	K	F	I	D	A	A	K	I	S	N	A	D	E	R	L	E	A	V	H	E	V	L	M	L	L	P	P	A	H	Y	E	T	L
Template Known Secondary structure							S	S	T	T	T	T	S				S	S	S	S			T															S	S		T	T		S	T	T						T	T	T	T																T	T	S
Template Predicted Secondary structure
Template SS confidence
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
		432	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.						470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.
Predicted Secondary structure																																								.	.	.	.	.
Query SS confidence																																								.	.	.	.	.
Query Sequence		Q	Y	M	L	E	H	L	K	R	V	A	S	H	Y	A	V	N	K	M	N	E	H	N	L	A	T	V	F	A	P	T	L	I	A	T	P	Q	H	.	.	.	.	.	M	T	N	L	T	E	E	I	F	M	L	S	S	L	I	T	H	C	K	T	I	F
Query Conservation																																								.	.	.	.	.
Alig confidence																																								.	.	.	.	.
Template Conservation
Template Sequence		R	Y	L	M	I	H	L	K	K	V	T	M	N	E	K	D	N	F	M	N	A	E	N	L	G	I	V	F	G	P	T	L	M	R	P	P	E	D	S	T	L	T	T	L	H	D	M	R	Y	Q	K	L	I	V	Q	I	L	I	E	N	E	D	V	L	F
Template Known Secondary structure				T	T	T	T	T					T	T	T	T	T	S												T	T	T	S						S		T	T	G	G	G	G	T														T
Template Predicted Secondary structure
Template SS confidence
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.