Job Description Q9VIF7 Confidence 98.34% Date Tue Jan 22 11:36:07 GMT 2013 Rank 236 Aligned Residues 140 % Identity 12% Template c2hpkA_ PDB info PDB header:luminescent protein Chain: A: PDB Molecule:photoprotein berovin; PDBTitle: crystal structure of photoprotein berovin from beroe2 abyssicola Resolution 2.00 Å

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		17	.	.	20	.	.	.	.	.	.		.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.												.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure												.																		.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.																		.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	Y	Q	E	Q	F	R	A	L	Q	.	P	Q	A	G	F	V	T	G	A	Q	A	K	G	F	F	L	Q	.	.	.	.	.	.	.	.	.	.	.	S	Q	L	P	P	L	I	L	G	Q	I	W	A	L	A	D	T	D	S	D	G	K	M	N	I	N	E	F	S	I	A	C	K	L	I	N	L	K	L	R	G
Query Conservation												.																		.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.																		.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	L	Y	K	R	F	D	T	F	D	L	D	S	D	G	K	X	E	X	D	E	V	L	Y	W	P	D	R	X	R	Q	L	V	N	A	T	D	E	Q	V	E	K	X	R	D	A	V	R	V	F	F	L	H	K	G	V	E	P	V	N	G	L	L	R	E	D	W	V	E	A	N	R	V	F	A	E	A	E	R	E
Template Known Secondary structure												T	T		S	S								T										S																					T	T		B	T	T	T	B			G	G	G
Template Predicted Secondary structure
Template SS confidence
		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	D	V	P	K	V	L	P	P	S	L	L	S	S	L	T	G	D	V	P	S	M	T	P	R	G	S	T	S	S	L	S	P	L	D	P	L	K	G	I	V	P	A	V	A	P	V	V	P	V	V	A	P	P	V	A	V	A	T	V	I	S	P	P	G	V	S	V	P	S	G	P	T	P	P	T	S	N	P	P
Query Conservation
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	R	H	T	S	I	S	E	R	A	P	S	I	E	S	V	N	Q	G	E	W	A	V	Q	A	A	Q	K	R	K	Y	T	Q	V	F	N	A	N	D	R	T	R	S	G	Y	L	T	G	S	Q	A	R	G	V	L	V	Q	S	K	L	P	Q	V	T	L	A	Q	I	W	T	L	S	D	I	D	G	D	G	R	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	E	R	R	G	E	P	S	L	I	A	L	L	S	N	S	Y	Y	D	V	L	D	D	D	G	D	G	T	V	D	V	D	E	L	K	T	X	X	K	A	F	D	V	P	Q	E	A	A	Y	T	F	F	E	K	A	D	T	D	K	S	G	K	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	T																		T	T		S	S	S	B												T	T	S		T	T											T	T			S	S	B
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																			117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
		245	.	.	.	.	250	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	C	D	E	F	I	L	A	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	R	T	E	L	V	H	L	F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		180	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions