03/02/2013 14:25:24 : INFO  : Run start: Sun Feb  3 14:25:24 GMT 2013
03/02/2013 14:25:24 : INFO  : Initialised job
03/02/2013 14:25:24 : INFO  : Initialised job:
Sequence
>batch____
MNSAVDAWAVTPRERLKYQEQFRALQPQAGFVTGAQAKGFFLQSQLPPLILGQIWALADT
DSDGKMNINEFSIACKLINLKLRGMDVPKVLPPSLLSSLTGDVPSMTPRGSTSSLSPLDP
LKGIVPAVAPVVPVVAPPVAVATVISPPGVSVPSGPTPPTSNPPSRHTSISERAPSIESV
NQGEWAVQAAQKRKYTQVFNANDRTRSGYLTGSQARGVLVQSKLPQVTLAQIWTLSDIDG
DGRLNCDEFILAMFLCEKAMAGEKIPVTLPQEWVPPNLRKIKSRPGSVSGVVSRPGSQPA
SRHASVSSQSGVGVVDADPTAGLPGQTSFEDKRKENYVKGQAELDRRRKIMEDQQRKERE
ERERKEREEADKREKARLEAERKQQEELERQLQRQREIEMEKEEQRKRELEAKEAARKEL
EKQRQQEWEQARIAEMNAQKEREQERVLKQKAHNTQLNVELSTLNEKIKELSQRICDTRA
GVTNVKTVIDGMRTQRDTSMSEMSQLKARIKEQNAKLLQLTQERAKWEAKSKASGAALGG
ENAQQEQLNAAFAHKQLIINQIKDKVENISKEIESKKEDINTNDVQMSELKAELSALITK
CEDLYKEYDVQRTSVLELKYNRKNETSVSSAWDTGSSSAWEETGTTVTDPYAVASNDISA
LAAPAVDLGGPAPEGFVKYQAVYEFNARNAEEITFVPGDIILVPLEQNAEPGWLAGEING
HTGWFPESYVEKLEVGEVAPVAAVEAPVDAQVATVADTYNDNINTSSIPAASADLTAAGD
VEYYIAAYPYESAEEGDLSFSAGEMVMVIKKEGEWWTGTIGSRTGMFPSNYVQKADVGTA
STAAAEPVESLDQETTLNGNAAYTAAPVEAQEQVYQPLPVQEPSEQPISSPGVGAEEAHE
DLDTEVSQINTQSKTQSSEPAESYSRPMSRTSSMTPGMRAKRSEIAQVIAPYEATSTEQL
SLTRGQLIMIRKKTDSGWWEGELQAKGRRRQIGWFPATYVKVLQGGRNSGRNTPVSGSRI
EMTEQILDKVIALYPYKAQNDDELSFDKDDIISVLGRDEPEWWRGELNGLSGLFPSNYVG
PFVTSGKPAKANGTTKK

03/02/2013 14:25:24 : INFO  : Checked sequence
03/02/2013 14:25:24 : INFO  : Finding homologues with PSI-BLAST
03/02/2013 14:25:24 : INFO  : PSI-BLAST 3 iterations
03/02/2013 14:30:31 : INFO  : PSI-BLAST 5 iterations
03/02/2013 14:34:24 : INFO  : Finished PSI-BLAST
03/02/2013 14:34:24 : INFO  : Running Buildali to generate a3m file
03/02/2013 17:08:00 : INFO  : Converting to HMM
03/02/2013 17:10:46 : INFO  : Calibrating HMM
03/02/2013 17:11:07 : INFO  : Searching HMM database
03/02/2013 17:30:31 : INFO  : Finished buildali
03/02/2013 17:30:31 : INFO  : Predicting secondary structure
03/02/2013 17:30:32 : INFO  : Predicted secondary structure (PSI-Pred)
03/02/2013 17:30:32 : INFO  : Predicting Disordered regions
03/02/2013 17:30:32 : INFO  : Predicted Disorder (Disopred)
03/02/2013 17:30:32 : INFO  : Running memsat_svm check
03/02/2013 17:52:43 : INFO  : Running memsat_svm full
03/02/2013 17:55:05 : INFO  : Predicted Transmembrane (memsat_svm) ID '603283f5cccf2ada'
03/02/2013 17:55:05 : INFO  : Initialising fold library search
03/02/2013 17:55:05 : INFO  : Initialised search input
03/02/2013 17:55:05 : INFO  : Building Ensemble models
03/02/2013 17:55:05 : INFO  : Building hh.c2khnA_.model.1.pdb
03/02/2013 17:55:05 : INFO  : Building hh.c3fiaA_.model.2.pdb
03/02/2013 17:55:05 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/603283f5cccf2ada/hh.c3fiaA_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/603283f5cccf2ada/c3fiaA_.3.pdb
03/02/2013 17:55:06 : INFO  : Building hh.c1griA_.model.3.pdb
03/02/2013 17:55:06 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/603283f5cccf2ada/hh.c1griA_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/603283f5cccf2ada/c1griA_.4.pdb
03/02/2013 17:55:06 : INFO  : Building hh.c2lqnA_.model.4.pdb
03/02/2013 17:55:06 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/603283f5cccf2ada/hh.c2lqnA_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/603283f5cccf2ada/c2lqnA_.5.pdb
03/02/2013 17:55:06 : INFO  : Building hh.c1ov3A_.model.5.pdb
03/02/2013 17:55:07 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/603283f5cccf2ada/hh.c1ov3A_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/603283f5cccf2ada/c1ov3A_.11.pdb
03/02/2013 17:55:07 : INFO  : Building c2khnA_.1.pdb
03/02/2013 17:55:07 : INFO  : Building c2jq6A_.2.pdb
03/02/2013 17:55:07 : INFO  : Building c3fiaA_.3.pdb
03/02/2013 17:55:07 : INFO  : Building c1griA_.4.pdb
03/02/2013 17:55:08 : INFO  : Building c2lqnA_.5.pdb
03/02/2013 17:55:08 : INFO  : Building c2eyzA_.6.pdb
03/02/2013 17:55:09 : INFO  : Building c2kfhA_.7.pdb
03/02/2013 17:55:09 : INFO  : Building c1ng2A_.8.pdb
03/02/2013 17:55:09 : INFO  : Building c2l3sA_.9.pdb
03/02/2013 17:55:09 : INFO  : Building d2jxca1.10.pdb
03/02/2013 17:55:10 : INFO  : Building c1ov3A_.11.pdb
03/02/2013 17:55:10 : INFO  : Building c2qptA_.12.pdb
03/02/2013 17:55:10 : INFO  : Building c2kgrA_.13.pdb
03/02/2013 17:55:11 : INFO  : Building d1iq3a_.14.pdb
03/02/2013 17:55:11 : INFO  : Building d1fi6a_.15.pdb
03/02/2013 17:55:11 : INFO  : Building c1mv3A_.16.pdb
03/02/2013 17:55:11 : INFO  : Building d1c07a_.17.pdb
03/02/2013 17:55:12 : INFO  : Building d1udla_.18.pdb
03/02/2013 17:55:12 : INFO  : Building d1qjta_.19.pdb
03/02/2013 17:55:12 : INFO  : Building d1ng2a2.20.pdb
03/02/2013 17:55:15 : INFO  : Finished HH model building
03/02/2013 17:55:15 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
03/02/2013 17:55:18 : INFO  : html domain output complete ID '603283f5cccf2ada'
03/02/2013 18:03:26 : INFO  : Run end  : Sun Feb  3 18:03:26 GMT 2013
