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Job DescriptionP00528
Confidence100.00%DateTue Jan 22 11:25:29 GMT 2013
Rank41Aligned Residues263
% Identity24%Templatec4fijA_
PDB info PDB header:transferaseChain: A: PDB Molecule:serine/threonine-protein kinase pak 4; PDBTitle: catalytic domain of human pak4
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   280.........290.........300...... ...310........ .320.........330.........340.........350.......
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Query Sequence  PRSEIQLLRKLGRGNFGEVFYGKWRNS. IDVAVKTLREGT. MSTAAFLQEAAIMKKFRHNRLVALYAVCSQEEPIYIVQE
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Template Sequence  PRSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVME
Template Known Secondary structure  GGGT
SSSTTT

STT
SSGGG


TTB

TT
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   317..320.........330.........340.........350.........360.........370.........380.........390......
 
   358.360.........370.........380.........390.........400.........410.........420.........430.......
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Query Sequence  YMSKGSLLDFLREGDGRYLHFEDLIYIATQVASGMEYLESKQLIHRDLAARNVLIGENNVAKICDFGLARVIADDEYCPK
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Template Sequence  FLEGGALTDIVTHTR. . . MNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRK
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TTS
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SGGG
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B
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   397..400.........410. ........420.........430.........440.........450.........460.........470...
 
   438.440.........450.........460.........470.........480.........490.........500.........510.......
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Query Sequence  QGSRFPVKWTAPEAIIYGKFSIKSDVWSYGILLMELFTYGQVPYPGMHSREVIENIERGFRMPKPTNHYFPDNIYQLLLQ
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Template Sequence  LV. . GTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVD. GEPPYFNEPPLKAMKMIRDNLPPRLKNLHKVSPSLKGFLDR
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..S
GGG

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B
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   475. ...480.........490.........500.........510 .........520.........530.........540.........550.
 
   518.520.........530.........540.........550
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Query Sequence  CWDAVPEKRPTFEFLNHYFESFSVTSEVPYREV
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Template Sequence  LLVRDPAQRATAAELLK. . HPFLAKAGPPASIV
Template Known Secondary structure  S
SSTTTS

TT..
GGGGG


GGGGG
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   552.......560........ .570.........580..
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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