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Job DescriptionP00528
Confidence100.00%DateTue Jan 22 11:25:29 GMT 2013
Rank162Aligned Residues252
% Identity20%Templatec4dc2A_
PDB info PDB header:transferase/transferase substrateChain: A: PDB Molecule:protein kinase c iota type; PDBTitle: structure of pkc in complex with a substrate peptide from par-3
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   279280.........290.........300...... ...310.........320.........330.... .....340.........350......
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Query Sequence  IPRSEIQLLRKLGRGNFGEVFYGKWRNS. IDVAVKTLREGTMSTAAFLQEAAIMKKF. RHNRLVALYAVCSQEEPIYIVQ
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Template Sequence  LGLQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVI
Template Known Secondary structure 

GGG
SSTTTTGGGT


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   239240.........250.........260.........270.........280.........290.........300.........310........
 
   357..360.........370.........380.........390.........400.........410.........420.........430......
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Query Sequence  EYMSKGSLLDFLREGDGRYLHFEDLIYIATQVASGMEYLESKQLIHRDLAARNVLIGENNVAKICDFGLARVIADDEYCP
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Template Sequence  EYVNGGDLMFHMQRQ. . RKLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTT
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TT
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   323......330....... ..340.........350.........360.........370.........380.........390.........400
 
   437..440.........450.........460.........470.........480.........490.........500.........510......
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Query Sequence  KQGSRFPVKWTAPEAIIYGKFSIKSDVWSYGILLMELFTYGQVPYPGMHSREVIENIERGFRMPKPTNHYFPDNIYQLLL
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Template Sequence  ST. FCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMA. GRSPFDIVGSNTEDYLFQVILEKQIRIPRSLSVKAASVLK
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   401. .......410.........420.........430........ .440.........450.........460.........470........
 
   517..520....... ..530....
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Query Sequence  QCWDAVPEKRP. . . . . . TFEFLNH
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Template Sequence  SFLNKDPKERLGCHPQTGFADIQG
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TTTSTT
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   485....490.........500........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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