 |
| Job Description | P00528 | | Confidence | 100.00% | Date | Tue Jan 22 11:25:29 GMT 2013 |
| Rank | 84 | Aligned Residues | 259 |
| % Identity | 37% | Template | c3v5qB_ |
| PDB info |
PDB header:transferase/transferase inhibitor | Chain: B: PDB Molecule:nt-3 growth factor receptor; |
PDBTitle: discovery of a selective trk inhibitor with efficacy in rodent cancer2 tumor models
|
| Resolution | 2.20 Å |
|
 |
|   |   |
275 | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | |
. | . | . | . | 300 | . | . | . | . | . | . | |
. | . | . | 310 | . | . | . | . | . | . | . | . | |
. | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . |
| Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
| . |  |  |  |  |  |  |  |  |
|
|
| . |  |  |  |  |  |  |  |  |
|
|
|
| . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|  |
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
D | K | Y | E | I | P | R | S | E | I | Q | L | L | R | K | L | G | R | G | N | F | . |
G | E | V | F | Y | G | K | W | R | N | S | . |
I | D | V | A | V | K | T | L | R | E | G | T | . |
M | S | T | A | A | F | L | Q | E | A | A | I | M | K | K | F | R | H | N | R | L | V | A | L | Y | A | V | C | S | Q | E | E | P |
| Query Conservation |   |
  |   |   |
|
|   |   |   |   |
|   |
|   |   |   |
|
|   |
|   |
| . |
|   |
|   |   |
|   |   |   |   |   | . |   |   |
|
|
|
|   |
|
|   |   |   | . |   |   |   |   |   |
|
|   |
|   |   |
|
|   |   |
|   |
|
|
|
|
|   |
|   |
|   |   |   |   |   |   |   |
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
| Template Conservation |   |
  |   |   |   |
|   |   |   |   |   |   |   |   |   |   |
|
|   |
|   |
|   |
|   |
|
|   |   |   |   |   |   |   |   |   |   |
|
|
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |
|   |   |
|   |
|
|
|
|
|   |   |   |   |   |   |   |   |   | . | . |
| Template Sequence |   |
H | V | Q | H | I | K | R | R | D | I | V | L | K | R | E | L | G | F | K | V | F | L | A | E | C | Y | N | L | S | P | T | K | D | K | M | L | V | A | V | K | A | L | K | D | P | T | L | A | A | R | K | D | F | Q | R | E | A | E | L | L | T | N | L | Q | H | E | H | I | V | K | F | Y | G | V | C | G | D | P | . |
. |
| Template Known Secondary structure |   |
|
|
|  |  |
| G | G | G |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  | S |
|
| S | S | S | S |  |  |  |  |  |  |  |  |
|
| S |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| T | T | B |
|
|  |  |  |  |  |
|
|
| . | . |
| Template Predicted Secondary structure |   |
|  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |
|
|
|
|
|
|
|
|
| . | . |
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
|
|
|