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Job DescriptionP00528
Confidence100.00%DateTue Jan 22 11:25:29 GMT 2013
Rank40Aligned Residues249
% Identity20%Templatec3soaA_
PDB info PDB header:transferase/transferase inhibitorChain: A: PDB Molecule:calcium/calmodulin-dependent protein kinase type ii subunit PDBTitle: full-length human camkii
Resolution3.55 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   281........290.........300.........310........ .320.........330.........340.........350.......
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Query Sequence  RSEIQLLRKLGRGNFGEVFYGKWRNSIDVAVKTLREGT. . . MSTAAFLQEAAIMKKFRHNRLVALYAVCSQEEPIYIVQE
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Template Sequence  TEEYQLFEELGKGSVVRRCVKVLAG. QEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYLIFD
Template Known Secondary structure 

TTTT.S
S


BTTB


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   10.........20.........30.... .....40.........50.........60.........70.........80........
 
   358.360.........370.........380.........390.........400.........410....... ..420.........430....
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Query Sequence  YMSKGSLLDFLREGDGRYLHFEDLIYIATQVASGMEYLESKQLIHRDLAARNVLIGENNV. . . AKICDFGLARVIADDEY
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Template Sequence  LVTGGELFEDIVAR. . EYYSEADASHCIQQILEAVLHCHQMGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQ
Template Known Secondary structure 

B

B
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B


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   91........100.... .....110.........120.........130.........140.........150.........160........
 
   435....440.........450.........460.........470.........480.........490....... ..500.........510...
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Query Sequence  CPKQGSRFPVKWTAPEAIIYGKFSIKSDVWSYGILLMELFTYGQVPYPGMHSREVIENIERGF. RMPKPTNHYFPDNIYQ
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Template Sequence  AWFG. FAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLV. GYPPFWDEDQHRLYQQIKAGAYDFPSPEWDTVTPEAKD
Template Known Secondary structure  B


.S
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GGG

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SST




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   169170.. .......180.........190.........200........ .210.........220.........230.........240......
 
   514.....520.........530....
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Query Sequence  LLLQCWDAVPEKRPTFEFLNH
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Template Sequence  LINKMLTINPSKRITAAEALK
Template Known Secondary structure  S
SSTTTS

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   247..250.........260.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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