Job Description P00528 Confidence 99.76% Date Tue Jan 22 11:25:29 GMT 2013 Rank 401 Aligned Residues 86 % Identity 22% Template c3gxxB_ PDB info PDB header:transcription Chain: B: PDB Molecule:transcription elongation factor spt6; PDBTitle: structure of the sh2 domain of the candida glabrata2 transcription elongation factor spt6, crystal form b Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220			.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure																																																															.	.
Query SS confidence																																																															.	.
Query Sequence		E	D	W	F	F	E	N	V	L	R	K	E	A	D	K	L	L	L	A	E	E	N	P	R	G	T	F	L	V	R	P	S	E	H	N	P	N	G	Y	S	L	S	V	K	D	W	E	D	G	R	G	Y	H	V	K	H	Y	R	I	K	P	.	.	L	D	N	G	G	Y	Y	I	A	T	N	Q	T	F	P	S	L
Query Conservation																																																															.	.
Alig confidence							.													.	.																													.	.	.	.										.	.
Template Conservation							.													.	.																													.	.	.	.
Template Sequence		H	P	Y	Y	F	.	P	F	N	G	K	Q	A	E	D	Y	L	R	.	.	S	K	E	R	G	D	F	V	I	R	Q	S	S	R	G	D	D	H	L	A	I	T	W	K	L	D	K	D	.	.	.	.	L	F	Q	H	V	D	I	Q	E	X	E	K	E	X	G	K	V	L	V	V	E	G	Q	R	Y	H	D	L
Template Known Secondary structure			T	T	B		.												T	.	.	T	S		T	T									S	T	T											T	T	.	.	.	.																				S	S	S				S	S
Template Predicted Secondary structure							.													.	.																													.	.	.	.
Template SS confidence
		10	.	.	.	.		.	.	.	.	.	20	.	.	.	.	.	.			.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.					.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	L	V	M	A	Y	S	K	N	A	L	G	L	C
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	Q	I	I	V	E	Y	L	Q	N	K	I	R	L	L
Template Known Secondary structure															T
Template Predicted Secondary structure
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions