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Job DescriptionP00528
Confidence100.00%DateTue Jan 22 11:25:29 GMT 2013
Rank33Aligned Residues252
% Identity23%Templatec3c4wB_
PDB info PDB header:transferaseChain: B: PDB Molecule:rhodopsin kinase; PDBTitle: crystal structure of g protein coupled receptor kinase 1 bound to atp2 and magnesium chloride at 2.7a
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   278.280.........290.........300...... ...310........ .320.........330.........340.........350..
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Query Sequence  EIPRSEIQLLRKLGRGNFGEVFYGKWRNS. IDVAVKTLREGT. . . . MSTAAFLQEAAIMKKFRHNRLVALYAVCSQEEPI
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Template Sequence  PMGEDWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDL
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GGG
SSSTTT

TT



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SS
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   181........190.........200.........210.........220.........230.........240.........250.........260
 
   353......360.........370 .........380.........390.........400.........410.........420.........430
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Query Sequence  YIVQEYMSKGSLLDFLRE. . GDGRYLHFEDLIYIATQVASGMEYLESKQLIHRDLAARNVLIGENNVAKICDFGLARVIA
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Template Sequence  CLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQRNIIYRDLKPENVLLDDDGNVRISDLGLAVELK
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TTS
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   261........270.........280.........290.........300.........310.........320.........330.........340
 
   431........440.........450.........460.........470.........480.... .....490.........500......
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Query Sequence  DDEYCPKQGSRFPVKWTAPEAIIYGKFSIKSDVWSYGILLMELFTYGQVPYPGM. . . . HSREVIENIERGFRMPKPTNHY
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Template Sequence  AGQTKTKG. YAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIA. ARGPFRARGEKVENKELKQRVLEQ. AVTYPDK. .
Template Known Secondary structure  TT


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   341....... .350.........360.........370.........380.... .....390.........400........ .410.....
 
   507..510.........520...... ...530....
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Query Sequence  FPDNIYQLLLQCWDAVPEKR. . . . . PTFEFLNH
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Template Sequence  FSPASKDFCEALLQKDPEKRLGFRDGSCDGLRT
Template Known Secondary structure  S
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SSGGGS


BTTBSTTGGG
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   416...420.........430.........440........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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