 |
| Job Description | P00528 | | Confidence | 99.90% | Date | Tue Jan 22 11:25:29 GMT 2013 |
| Rank | 357 | Aligned Residues | 103 |
| % Identity | 39% | Template | c2yt6A_ |
| PDB info |
PDB header:cell cycle | Chain: A: PDB Molecule:adult male urinary bladder cdna, riken full- |
PDBTitle: solution structure of the sh3_1 domain of yamaguchi sarcoma2 viral (v-yes) oncogene homolog 1
|
| Resolution | UNK |
|
 |
|   |   |
69 | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . |
| Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
G | P | L | K | I | G | G | K | G | G | V | D | I | I | R | P | R | T | T | P | T | G | V | P | G | V | V | L | K | R | V | V | V | A | L | Y | D | Y | K | S | R | D | E | S | D | L | S | F | M | K | G | D | R | M | E | V | I | D | D | T | E | S | D | W | W | R | V | V | N | L | T | T | R | Q | E | G | L | I | P | L |
| Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|
|   |
|   |   |   |   |   |   |
|
|   |
|   |
|
|
|   |   |   |
|
|   |   |   |   |   |   |
|
|   |   |   |   |   |   |   |
|   |   |
|   |
|
|   |
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation |   |
|
|
|
|   |   |   |   |
|   |
|   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   | . | . |   |   |   |
|
|   |
|
|   |
|   |   |   |   |
|
|
|   |   |   |
|
|   |
|   |
|
|   |   |   |   |   |   |
|
|   |   |   |   |   |   |   |
|   |   |
|   |
|
|
|
| Template Sequence |   |
G | S | S | G | S | S | G | A | S | S | S | F | S | V | V | S | S | S | Y | P | T | G | L | T | G | G | V | T | . |
. |
I | F | V | A | L | Y | D | Y | E | A | R | T | T | E | D | L | S | F | K | K | G | E | R | F | Q | I | I | N | N | T | E | G | D | W | W | E | A | R | S | I | A | T | G | K | S | G | Y | I | P | S |
| Template Known Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| S | S |
|
| S | S |
|
| . | . |  |  |  |  | S | S |
|
|
|
| S | S | T | T | S |
|
|
|
| T | T |
|  |  |  |  |  |  |
| S |
| T | T |
|  |  |  |  |  | S | S | S |
|
|  |  |  |  |
| T |
| Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  | . | . |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | |
|
. | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . |
|   |
|   |   |
149 | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . |
| Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
N | F | V | A | E | E | R | S | V | N | S | E | D | W | F | F | E | N | V | L | R | K | E | A | D |
| Query Conservation |   |
|
|
|   |   |   |   |   |
|
|   |   |   |
|
|
|
|   |
|
|
|   |
|
|
|
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation |   |
  |
|
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|   |   |
|
|
| Template Sequence |   |
N | Y | V | V | P | A | D | S | I | Q | A | E | E | W | Y | F | G | K | M | G | R | K | D | A | E |
| Template Known Secondary structure |   |
T | T |  |  |  | S | S | S |
| T | T | T |  |  |  |  |  |
|
|
| S |
|
|
|
|
| Template Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
79 | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . |
|   |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
|
|
|