280 c2vagA_ Probab=100.00  E-value=5.2e-38  Score=230.66  Aligned_columns=260  Identities=23%

Q ss_pred             EEEHHHEEEEEECCCCCCEEEEEEEECC--CEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCE------EEEEEEEEEC
Q ss_conf             3247858894232757781599999769--9099999988753698999999999986489947------0188728778
Q batch____       278 EIPRSEIQLLRKLGRGNFGEVFYGKWRN--SIDVAVKTLREGTMSTAAFLQEAAIMKKFRHNRL------VALYAVCSQE  349 (552)
Q Consensus       278 ei~~~~i~l~~~LG~G~fG~V~~g~~~~--~~~VAVK~lk~~~~~~~~fl~E~~il~~L~HpnI------v~l~g~~~~~  349 (552)
                      ++-.+.+++.++||+|+||.||+|+++.  +..||||+++.+....+.+++|+.+|++|+|+|+      +.+.+.....
T Consensus         9 ~~l~~~Y~i~~~LG~G~fG~V~~a~~~~~~~~~vAiK~i~~~~~~~~~~~~Ei~il~~l~h~~~~~~~~~~~~~~~~~~~   88 (330)
T c2vagA_           9 DVLSARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVDRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHH   88 (330)
T ss_dssp             CEETTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEET
T ss_pred             CEECCCEEEEEEEEECCCEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCC
T ss_conf             48678259999987628848999999767983999999839905689999999999984312223312220000123332


Q ss_pred             CEEEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEC
Q ss_conf             95899998889874999999478988899999999999999998511660893055765320253212343334204661
Q batch____       350 EPIYIVQEYMSKGSLLDFLREGDGRYLHFEDLIYIATQVASGMEYLESKQLIHRDLAARNVLIGENNVAKICDFGLARVI  429 (552)
Q Consensus       350 ~~~~iV~E~~~~GsL~~~L~~~~~~~l~~~~~~~~~~qia~gl~yLH~~~iiHrDlk~~Nili~~~~~~ki~DFGLs~~~  429 (552)
                      ..++++++++. +.....................+..+++.++.++|..+++|+|+++.|+++......++.+|+.+...
T Consensus        89 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~nil~~~~~~~~~~~~~~~~~~  167 (330)
T c2vagA_          89 GHICIVFELLG-LSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFLHSNKLTHTDLKPENILFVQSDYTEAYNKRDERTL  167 (330)
T ss_dssp             TEEEEEEECCC-CBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESCCCEEEEECCCEEEEE
T ss_pred             CEECCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCEEECCCCCCCCC
T ss_conf             00001221123-67521112221110136565555544555554311012222345541589857886200034543344


Q ss_pred             CCCC----------EEEECCCCCCHHHCCHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf             4786----------144314557967789779946899756899999999999992888999888989999999808999
Q batch____       430 ADDE----------YCPKQGSRFPVKWTAPEAIIYGKFSIKSDVWSYGILLMELFTYGQVPYPGMHSREVIENIERGFRM  499 (552)
Q Consensus       430 ~~~~----------~~~~~~~~~~i~y~APE~l~~~~~s~ksDVwSfGvil~Ellt~G~~Pf~~~~~~e~~~~i~~g~r~  499 (552)
                      ....          .........+..+.+||......++.++|+|++|+++|++.+ ++.|+...+..+.+..+....-.
T Consensus       168 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~  246 (330)
T c2vagA_         168 INPDIKVVDFGSATYDDEHHSTLVRHYRAPEVILALGWSQPCDVWSIGCILIEYYL-GFTVFPTHDSKEHLAMMERILGP  246 (330)
T ss_dssp             SCCCEEECCCSSCEETTSCCCSCCCCSCCHHHHTTSCCSTHHHHHHHHHHHHHHHH-SSCSCCCSCHHHHHHHHHHHHCS
T ss_pred             CCCCCEEECCCCCCCCCCCCEEEEECCCCCCHHHCCCCCCCCCCCEEEEEEECCCC-CCCCCCCCCHHHHHHHHHHHCCC
T ss_conf             44321000146633267542001210232100000111123542102258731004-88988758968999999851388


Q ss_pred             C-----------------------------------------CCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHH--HHHH
Q ss_conf             9-----------------------------------------88765799999999998726897786999999--9998
Q batch____       500 P-----------------------------------------KPTNHYFPDNIYQLLLQCWDAVPEKRPTFEFL--NHYF  536 (552)
Q Consensus       500 ~-----------------------------------------~p~~~~~p~~l~~li~~Cl~~dP~~RPtf~~i--~~~L  536 (552)
                      +                                         .+....+++++.+||.+||..||++|||+++|  +.+|
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dP~~R~t~~elL~Hp~f  326 (330)
T c2vagA_         247 LPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHERLFDLIQKMLEYDPAKRITLREALKHPFF  326 (330)
T ss_dssp             CCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHHHHTTSGGG
T ss_pred             CCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCCCCH
T ss_conf             99889744201212354656653210001110012333100235654589999999998665881117767899679114


Q ss_pred             HHH
Q ss_conf             753
Q batch____       537 ESF  539 (552)
Q Consensus       537 e~~  539 (552)
                      +++
T Consensus       327 ~~i  329 (330)
T c2vagA_         327 DLL  329 (330)
T ss_dssp             GGG
T ss_pred             HHC
T ss_conf             403


