Job Description Q08012 Confidence 78.94% Date Wed Feb 13 11:17:06 GMT 2013 Rank 317 Aligned Residues 136 % Identity 15% Template c2xp1A_ PDB info PDB header:transcription Chain: A: PDB Molecule:spt6; PDBTitle: structure of the tandem sh2 domains from antonospora locustae2 transcription elongation factor spt6 Resolution 2.20 Å

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		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	M	K	N	H	D	W	Y	Y	G	R	I	T	R	A	D	A	E	K	L	L	S	N	K	H	E	G	A	F	L	I	R	I	S	E	S	S	P	G	D	F	S	L	S	V	K	C	P	D	G	V	Q	H	F	K	V	L	R	D	A	Q	S	K	F	F	L	W	V	V	K	F	N	S	L	N	E	L	V	E	Y
Query Conservation
Alig confidence											.																.									.
Template Conservation											.																.									.
Template Sequence		R	F	Y	K	H	P	L	F	K	.	N	F	N	V	T	E	S	E	N	Y	L	R	S	S	T	.	D	D	F	L	I	R	K	G	.	S	R	H	G	Y	C	V	L	V	I	K	F	A	S	D	V	F	V	H	M	K	I	E	E	H	S	E	H	Y	T	C	S	N	K	H	F	E	D	I	D	E	V	I	S	V
Template Known Secondary structure		G	G	G	G	S	T	T			.														S	S	.									.	S	S	T	T										T	T											S	S					T	T				S	S
Template Predicted Secondary structure											.																.									.
Template SS confidence
		788	.	790	.	.	.	.	.	.		.	.	.	800	.	.	.	.	.	.	.	.	.	810	.		.	.	.	.	.	.	.	.		820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.
		134	.	.	.	.	.	140														.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170			.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.
Query Sequence		H	R	T	A	S	V	S	.	.	.	.	.	.	.	.	.	.	.	.	.	R	S	Q	D	V	K	L	R	D	M	I	P	E	E	M	L	V	Q	A	L	Y	D	F	V	P	Q	E	S	G	E	.	.	L	D	F	R	R	G	D	V	I	T	V	T	D	R	S	D	E	N	W	W	N	G
Query Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.
Template Conservation
Template Sequence		Y	V	R	P	I	L	R	N	L	K	S	I	K	A	H	A	K	Y	F	N	S	P	E	D	A	E	K	L	L	S	S	F	D	G	S	K	V	V	Y	A	F	Y	F	S	R	K	Y	P	G	K	L	T	F	A	Y	N	N	G	S	I	L	E	E	Y	I	G	V	S	D	M	L	T	Y	N
Template Known Secondary structure		T														S	T	T	B		S		T	T	T	S						T			S	S	S									S	S	S	T	T								S	S	S									S	S	S				T
Template Predicted Secondary structure
Template SS confidence
		865	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions