Job Description Q08012 Confidence 83.32% Date Wed Feb 13 11:17:06 GMT 2013 Rank 312 Aligned Residues 188 % Identity 11% Template c1m9sA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:internalin b; PDBTitle: crystal structure of internalin b (inlb), a listeria2 monocytogenes virulence protein containing sh3-like3 domains. Resolution 2.65 Å

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		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.			.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90		.	.	.
Predicted Secondary structure																					.	.																																																								.
Query SS confidence																					.	.																																																								.
Query Sequence		L	S	F	R	K	T	Q	I	L	K	I	L	N	M	E	D	D	S	N	.	.	W	Y	R	A	E	L	D	G	K	E	G	L	I	P	S	N	Y	I	E	M	K	N	H	D	W	Y	Y	G	R	I	T	R	A	D	A	E	K	L	L	S	N	K	H	E	G	A	F	L	I	R	I	S	E	S	S	.	P	G	D
Query Conservation																					.	.																																																								.
Alig confidence																					.	.					.	.	.																																																	.
Template Conservation																											.	.	.
Template Sequence		L	A	S	H	R	C	K	A	L	T	V	D	R	E	A	R	N	G	G	K	L	W	Y	R	L	.	.	.	K	N	I	G	W	T	K	A	E	N	L	S	L	D	R	Y	D	K	M	E	Y	D	K	G	V	T	A	Y	A	R	V	R	N	A	S	G	N	S	V	W	T	K	P	Y	N	T	A	G	A	K	H	V
Template Known Secondary structure		S		T	T	T	T	S				B						B	T	T	B					B	.	.	.	T	T	S					T	T	T	S		S	S						S												S			T	T				B	S	S	S	S	S	S	T	T
Template Predicted Secondary structure																											.	.	.
Template SS confidence
		427	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.				.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.							.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.
Query Sequence		F	S	L	S	V	K	C	P	D	G	V	Q	H	F	K	V	L	R	D	A	Q	S	K	F	F	L	W	V	V	K	F	N	S	L	N	E	L	V	E	Y	.	.	.	.	.	.	H	R	T	A	S	V	S	R	S	Q	D	V	K	L	R	D	M	I	P	E	E	M	L	V	Q	A	L	Y	D	F	V	P	Q	E
Query Conservation																																										.	.	.	.	.	.
Alig confidence																																										.	.	.	.	.	.
Template Conservation
Template Sequence		N	K	L	S	V	Y	Q	G	K	N	M	R	I	L	R	E	A	K	T	P	I	T	T	W	Y	Q	F	S	I	G	G	K	V	I	G	W	V	D	T	R	A	L	N	T	F	Y	K	Q	S	M	E	K	P	T	R	L	T	R	Y	V	S	A	N	K	A	G	E	S	Y	Y	K	V	P	V	A	D	N	P	V	K
Template Known Secondary structure				G	G	G	G		S	S											S	S									T	T								T	T	T							G	G	G												T	T	T	T	T	S				S	S	S	S			G	G	G
Template Predicted Secondary structure
Template SS confidence
		504	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.				.	.	.	.	.	190	.	.	.	.		.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.											.
Query SS confidence																			.	.	.											.
Query Sequence		S	G	E	L	D	F	R	R	G	D	V	I	T	V	T	D	R	.	.	.	S	D	E	N	W	W	N	G	E	I	.	G	N	R	K	G	I	F	P	A	T	Y	V	T
Query Conservation																			.	.	.											.
Alig confidence																			.	.	.											.
Template Conservation
Template Sequence		R	G	T	L	A	K	Y	K	N	Q	K	L	I	V	D	C	Q	A	T	I	E	G	Q	L	W	Y	R	I	R	T	S	S	T	F	I	G	W	T	K	A	A	N	L	R
Template Known Secondary structure					G	G	G	S	T	T												T	T									S	S	S							G	G	G
Template Predicted Secondary structure
Template SS confidence
		584	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions