Job Description Q9VXH3 Confidence 99.53% Date Wed Feb 13 11:23:55 GMT 2013 Rank 33 Aligned Residues 172 % Identity 16% Template c3or8A_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt6; PDBTitle: a tandem sh2 domain in transcription elongation factor spt6 Resolution 1.60 Å

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		585	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.		.	640	.	.	.	.	.	.	.	.	.	650	.				.	.	.	.	.	.	.	.	660
Predicted Secondary structure																																																								.														.	.	.
Query SS confidence																																																								.														.	.	.
Query Sequence		F	G	E	N	W	F	H	G	K	L	E	G	G	R	K	E	A	D	D	L	L	K	K	Y	K	H	F	G	D	G	T	F	L	V	R	E	S	A	T	F	V	G	D	Y	S	L	S	F	W	R	R	N	R	P	.	N	H	C	R	I	K	L	K	H	E	N	G	S	.	.	.	I	K	Y	Y	L	V	E	N	F
Query Conservation																																																								.														.	.	.
Alig confidence									.				.	.										.	.	.																														.														.	.	.
Template Conservation									.				.	.										.	.	.
Template Sequence		I	N	H	P	Y	Y	F	.	P	F	N	.	.	G	K	Q	A	E	D	Y	L	R	.	.	.	S	K	E	R	G	D	F	V	I	R	Q	S	S	R	G	D	D	H	L	A	I	T	W	K	L	D	K	D	L	F	Q	H	V	D	I	Q	E	L	E	K	E	N	P	L	A	L	G	K	V	L	V	V	E	G	Q
Template Known Secondary structure					T	T			.				.	.									T	.	.	.	T	S		T	T								S	S		T	T										T	T											S		S	S	T	T	S			S					T	T
Template Predicted Secondary structure									.				.	.										.	.	.
Template SS confidence
		4	.	.	.	.	.	10		.	.	.			.	.	.	.	.	.	20	.	.				.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		661	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.			.	.	.	720	.	.	.	.	.	.				.	.	.	730	.	.	.	.	.
Predicted Secondary structure																																																										.	.											.	.	.
Query SS confidence																																																										.	.											.	.	.
Query Sequence		V	F	D	S	L	Y	S	L	I	V	Y	Y	R	K	N	M	L	R	S	S	E	F	S	I	I	L	K	E	P	V	P	Q	P	K	K	H	E	D	Q	E	W	F	H	P	N	T	T	K	E	Q	A	E	Q	G	L	Y	.	.	R	L	E	I	G	S	F	L	V	R	.	.	.	P	S	V	Q	S	I	N	A	F
Query Conservation																																																										.	.											.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.															.	.					.	.											.	.											.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.															.	.					.	.
Template Sequence		R	Y	H	D	L	D	Q	I	I	V	E	Y	L	Q	.	.	.	.	.	.	.	.	.	.	N	K	I	R	L	L	N	E	L	T	S	N	E	K	.	.	F	K	A	G	.	.	T	K	K	E	V	V	K	F	I	E	D	Y	S	K	V	N	P	K	K	S	V	Y	Y	F	S	L	N	Y	E	N	P	G	W	F
Template Known Secondary structure				S	S								T			.	.	.	.	.	.	.	.	.	.											T	S	T	T	.	.				S	.	.																	T	T										T	T	S	T	T
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.															.	.					.	.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.											.	.	.	.	.	.	.	.	100	.	.	.	.	.			.	.	.	.			110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
		736	.	.	.	740			.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.
Predicted Secondary structure							.	.
Query SS confidence							.	.
Query Sequence		V	I	S	F	T	.	.	I	N	R	K	I	K	H	C	R	I	M	Q	E	G	R	L	Y	G	I	D	T	M	N	F	E	S	L	V	S	L	I	N	Y	Y	T	R
Query Conservation							.	.
Alig confidence							.	.
Template Conservation
Template Sequence		Y	L	I	F	K	L	N	A	E	S	K	L	Y	I	W	N	V	K	L	T	H	T	G	F	F	L	V	N	Y	N	Y	P	T	V	I	Q	L	C	N	G	F	K	T
Template Known Secondary structure							S	S	T	T	S											S	S	S				T	T				S	S
Template Predicted Secondary structure
Template SS confidence
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions