Job Description Q9VXH3 Confidence 99.27% Date Wed Feb 13 11:23:55 GMT 2013 Rank 88 Aligned Residues 135 % Identity 18% Template c3nsjA_ PDB info PDB header:immune system Chain: A: PDB Molecule:perforin-1; PDBTitle: the x-ray crystal structure of lymphocyte perforin Resolution 2.75 Å

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		1078	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.			.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.
Predicted Secondary structure																																																					.	.
Query SS confidence																																																					.	.
Query Sequence		N	N	G	Q	C	G	Y	I	L	K	P	S	F	M	K	S	D	S	F	N	P	N	N	P	L	C	D	G	L	S	E	V	K	V	S	I	R	L	I	A	A	R	H	L	F	R	G	G	K	S	N	.	.	N	P	Q	I	V	V	E	L	I	G	A	S	F	D	T	G	V	K	Y	R	T	K	V	N	E	N	G
Query Conservation																																																					.	.
Alig confidence																										.	.	.	.	.																	.						.	.									.	.	.	.	.													.
Template Conservation																										.	.	.	.	.																	.																.	.	.	.	.													.
Template Sequence		S	H	D	S	C	Q	C	E	C	Q	D	S	K	V	T	N	Q	D	C	C	P	R	Q	R	.	.	.	.	.	G	L	A	H	L	V	V	S	N	F	R	A	E	H	L	W	.	G	D	Y	T	T	A	T	D	A	Y	L	K	V	F	F	.	.	.	.	.	G	G	Q	E	F	R	T	G	V	V	W	N	.	N
Template Known Secondary structure		S	S		T	T					S		T	T	T	B		G	G	G		B	S	S	T	.	.	.	.	.	T													S			.		S	S		S											.	.	.	.	.	T	T								B		S	.
Template Predicted Secondary structure																										.	.	.	.	.																	.																.	.	.	.	.													.
Template SS confidence
		388	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.						.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.		.	.	430	.	.	.	.	.	.	.	.	.	440	.	.						.	.	.	.	.	.	.	450	.	.	.	.		.
		1156	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.		.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200									.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.
Predicted Secondary structure																					.																											.	.	.	.	.	.	.	.
Query SS confidence																					.																											.	.	.	.	.	.	.	.
Query Sequence		F	N	P	V	W	N	E	S	C	E	F	N	V	R	N	P	Q	F	A	.	I	L	R	F	E	V	Q	D	E	D	M	F	A	E	T	H	F	I	A	Q	A	C	Y	P	L	T	.	.	.	.	.	.	.	.	C	I	R	Q	G	Y	R	S	V	I	L	R	N	K	F	S	E	E	L	E	L	S	S	L
Query Conservation																					.																											.	.	.	.	.	.	.	.
Alig confidence																					.																											.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	N	P	R	W	T	D	K	M	D	F	E	N	V	L	L	S	T	G	G	P	L	R	V	Q	V	W	D	A	D	Y	G	W	D	D	D	L	L	G	S	C	D	R	S	P	H	S	G	F	H	E	V	T	C	E	L	N	H	G	R	V	K	F	S	Y	H	A	K	C	L	P	H	L	T	G	G	T	C
Template Known Secondary structure		S	S		B												T	T	T													S	S	S														S										S	S	S												T	T			S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		456	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions