Return to main results Retrieve Phyre Job Id

Job DescriptionQ9VXH3
Confidence98.54%DateWed Feb 13 11:23:55 GMT 2013
Rank268Aligned Residues55
% Identity29%Templatec2js0A_
PDB info PDB header:signaling proteinChain: A: PDB Molecule:cytoplasmic protein nck1; PDBTitle: solution structure of second sh3 domain of adaptor nck
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   828.830.........840.........850.........860.........870.........880...
Predicted Secondary structure 









































Query SS confidence 























































Query Sequence  TCKALYSYKANKPDELSFPKHAIITNVQRDNSMWWIGDYGGMIKKHLPANYVKVID
Query Conservation     

    
    



 

 

 
  

  


 
    



 

  


   
Alig confidence 









































.












Template Conservation   
 
 
 
      


   

 
 
       
      
 . 
  
  

    
Template Sequence  PAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQ. VGWFPSNYVTEEG
Template Known Secondary structure 
S
B


STTB

B
TT

SSSTT.GGGSS
Template Predicted Secondary structure 


















.


Template SS confidence 























































   6...10.........20.........30.........40....... ..50.........60
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions