Job Description Q9VXH3 Confidence 97.31% Date Wed Feb 13 11:23:55 GMT 2013 Rank 417 Aligned Residues 155 % Identity 17% Template c1s1eA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:kv channel interacting protein 1; PDBTitle: crystal structure of kv channel-interacting protein 12 (kchip-1) Resolution 2.30 Å

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		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.		200	.	.	.	.	.		.	.	.	.
Predicted Secondary structure																																																																						.							.
Query SS confidence																																																																						.							.
Query Sequence		G	L	R	Y	M	V	K	D	T	L	G	A	P	Y	P	L	Q	I	D	R	W	L	R	R	E	Y	Y	Q	I	E	N	V	N	T	H	S	A	K	A	T	E	Q	S	P	A	Q	V	T	I	K	D	F	K	L	F	L	A	G	V	S	C	K	M	T	T	G	K	F	.	M	E	H	F	T	E	.	D	V	R	R
Query Conservation																																																																						.							.
Alig confidence																			.	.	.							.	.	.	.	.	.	.	.	.	.	.	.																															.							.
Template Conservation																			.	.	.							.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	L	E	Q	L	E	A	Q	T	N	F	T	K	R	E	L	Q	.	.	.	V	L	Y	R	G	F	.	.	.	.	.	.	.	.	.	.	.	.	K	N	E	C	P	S	G	V	V	N	E	E	T	F	K	Q	I	Y	A	Q	F	F	P	H	G	D	A	S	T	Y	A	H	Y	L	F	N	A	F	D	T	T	Q
Template Known Secondary structure										S	S								.	.	.							.	.	.	.	.	.	.	.	.	.	.	.					T	T	S		B											T	T		T	T	S															T	T
Template Predicted Secondary structure																			.	.	.							.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.				.	.	.	.	.	60													.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.								.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure																																																								.	.	.	.	.	.	.
Query SS confidence																																																								.	.	.	.	.	.	.
Query Sequence		K	H	D	L	K	F	D	D	F	S	R	L	Y	Q	K	L	L	L	P	N	G	F	A	S	V	L	S	G	S	G	V	A	N	F	P	Y	S	E	D	Q	Q	V	V	R	P	A	E	L	K	Q	F	L	E	T	.	.	.	.	.	.	.	E	Q	R	D	V	S	A	S	E	I	S	S	A	A	I	A	S	F	I
Query Conservation																																																								.	.	.	.	.	.	.
Alig confidence																																.	.	.																						.	.	.	.	.	.	.
Template Conservation																																.	.	.
Template Sequence		T	G	S	V	K	F	E	D	F	V	T	A	L	S	I	L	L	R	G	T	V	H	E	K	L	R	W	T	F	N	.	.	.	L	Y	D	I	N	K	D	G	Y	I	N	K	E	E	M	M	D	I	V	K	A	I	Y	D	M	M	G	K	Y	T	Y	P	V	L	K	E	D	T	P	R	Q	H	V	D	V	F	F
Template Known Secondary structure		S	S		B																											.	.	.				T	T			S																			T	T				G	G	G		S	S	S
Template Predicted Secondary structure																																.	.	.
Template SS confidence
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.				.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	D	F	V	Q	D	V	E	R	D	V	Q	E	P	Y	L	T	F	P	E	F	V	D	F	L	F	S
Query Conservation
Alig confidence					.	.	.	.	.
Template Conservation					.	.	.	.	.
Template Sequence		Q	K	M	.	.	.	.	.	D	K	N	K	D	G	I	V	T	L	D	E	F	L	E	S	C	Q	E
Template Known Secondary structure					.	.	.	.	.		T	T		S	S													T
Template Predicted Secondary structure					.	.	.	.	.
Template SS confidence
		180	.	.						.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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