Job Description Q7KSQ2 Confidence 100.00% Date Tue Jan 22 11:45:00 GMT 2013 Rank 184 Aligned Residues 257 % Identity 18% Template c3op5B_ PDB info PDB header:transferase Chain: B: PDB Molecule:serine/threonine-protein kinase vrk1; PDBTitle: human vaccinia-related kinase 1 Resolution 2.40 Å

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		462	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.			480	.	.	.	.	.	.	.	.	.	490	.	.								.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.														.	510	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.														.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.														.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	G	W	V	I	P	E	A	E	L	Q	L	R	E	S	I	G	K	.	.	G	E	F	G	D	V	M	L	G	I	L	R	N	.	.	.	.	.	.	.	E	K	V	A	V	K	M	L	K	D	E	G	A	V	Q	K	.	.	.	.	.	.	.	.	.	.	.	.	.	F	L	A	E	A	S	V	M	T	T	L
Query Conservation																				.	.														.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.														.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	V	G	E	I	I	T	D	M	A	A	A	A	W	K	V	G	L	P	I	G	Q	F	G	C	I	Y	L	A	D	M	N	S	S	E	S	V	G	S	D	A	P	C	V	V	K	V	E	P	S	D	N	G	P	L	F	T	E	L	K	F	Y	Q	R	A	A	K	P	E	Q	I	Q	K	W	I	R	T	R	K	L
Template Known Secondary structure			T	T						T	T											.													S	S				T	T		S								T	T																											T	T
Template Predicted Secondary structure
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
		520	.	.	.	.	.	.	.	.	.	530	.	.					.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.
Predicted Secondary structure															.	.	.	.
Query SS confidence															.	.	.	.
Query Sequence		E	H	D	N	L	V	K	F	I	G	L	V	F	.	.	.	.	T	S	K	H	L	Y	L	V	T	E	Y	M	S	K	G	S	L	V	D	Y	L	R	S	R	G	R	Q	H	I	T	K	K	D	Q	I	I	F	A	Y	D	T	A	S	G	M	E	Y	L	E	A	K	K	V	V	H	R	D	L	A	A	R	N	V
Query Conservation															.	.	.	.
Alig confidence															.	.	.	.													.															.
Template Conservation																															.															.
Template Sequence		K	Y	L	G	V	P	K	Y	W	G	S	G	L	H	D	K	N	G	K	S	Y	R	F	M	I	M	D	R	F	.	G	S	D	L	Q	K	I	Y	E	A	N	A	K	R	.	F	S	R	K	T	V	L	Q	L	S	L	R	I	L	D	I	L	E	Y	I	H	E	H	E	Y	V	H	G	D	I	K	A	S	N	L
Template Known Secondary structure		S				S												T	T												.											T	T	S		.																							T	T								G	G	G
Template Predicted Secondary structure																															.															.
Template SS confidence
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.		.	.	.	.	.	140	.	.	.	.	.	.	.	.		.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
		596	.	.	.	600	.			.	.	.	.	.	.	.	.	610	.	.	.	.											.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.
Predicted Secondary structure								.	.														.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.														.	.	.	.	.	.	.	.	.	.
Query Sequence		L	I	S	E	D	C	.	.	V	A	K	V	S	D	F	G	L	A	R	E	E	.	.	.	.	.	.	.	.	.	.	C	Y	N	L	D	V	G	K	L	P	I	K	W	T	A	P	E	A	L	K	N	G	R	F	S	N	K	S	D	M	W	S	F	G	I	L	L	W	E	I	Y	S	F	G	R	V	P	Y	P
Query Conservation								.	.														.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.														.	.	.	.	.	.	.	.	.	.																																											.
Template Conservation																																																																											.
Template Sequence		L	L	N	Y	K	N	P	D	Q	V	Y	L	V	D	Y	G	L	A	Y	R	Y	C	P	E	G	V	H	K	A	Y	A	A	D	P	K	R	C	H	D	G	T	I	E	F	T	S	I	D	A	H	N	G	V	A	P	S	R	R	G	D	L	E	I	L	G	Y	C	M	I	Q	W	L	T	.	G	H	L	P	W	E
Template Known Secondary structure					S	S		T	T								T	T				S	S	G	G	G					S	S			S	S							T	T	T							T	T																						.	S			T	T	G
Template Predicted Secondary structure																																																																											.
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.		.	.	.	260	.	.
		664	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.											.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.
Query Sequence		R	I	P	L	A	D	V	V	K	H	V	E	V	G	Y	K	M	E	.	.	.	.	.	.	.	.	.	.	A	P	E	G	C	P	P	E	I	Y	E	M	M	R	Q	A	W	D	L	N	P	A	K	R	P	T	F	A	E	L	K	V	K	L	Q	L	L	N	N	A
Query Conservation																				.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	N	L	K	D	P	K	Y	V	R	D	S	K	I	R	Y	R	E	N	I	A	S	L	M	D	K	C	F	P	A	A	N	A	P	G	E	I	A	K	Y	M	E	T	V	K	L	L	D	Y	T	E	K	P	L	Y	E	N	L	R	D	I	L	L	Q	G	L	K	A
Template Known Secondary structure		G	G	T	T																								S		T	T															T			T	T
Template Predicted Secondary structure
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions