Job Description Q7KSQ2 Confidence 100.00% Date Tue Jan 22 11:45:00 GMT 2013 Rank 138 Aligned Residues 256 % Identity 19% Template c2kulA_ PDB info PDB header:transferase Chain: A: PDB Molecule:serine/threonine-protein kinase vrk1; PDBTitle: solution structure of human vaccinia related kinase 1(vrk1) Resolution UNK

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		465	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.								.	.	.	.	.	.	.	.	500	.	.	.	.														.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	I	P	E	A	E	L	Q	L	R	E	S	I	G	K	G	E	F	G	D	V	M	L	G	I	L	R	.	.	.	.	.	.	.	N	E	K	V	A	V	K	M	L	K	D	E	G	.	.	.	.	.	.	.	.	.	.	.	.	.	A	V	Q	K	F	L	A	E	A	S	V	M	T	T	L	E	H	D	N	L
Query Conservation																													.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																													.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	M	A	K	K	E	W	K	V	G	L	P	I	G	Q	G	G	F	G	C	I	Y	L	A	D	M	N	S	S	E	S	V	G	S	D	A	P	C	V	V	K	V	E	P	S	D	N	G	P	L	F	T	E	L	K	F	Y	Q	R	A	A	K	P	E	Q	I	Q	K	W	I	R	T	R	K	L	K	Y	L	G	V
Template Known Secondary structure			T	T	S												S	S	S	S	S									S	S				S	S	S	S								T	T		S	S																								T	T
Template Predicted Secondary structure
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
		525	.	.	.	.	530	.	.					.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600
Predicted Secondary structure										.	.	.	.
Query SS confidence										.	.	.	.
Query Sequence		V	K	F	I	G	L	V	F	.	.	.	.	T	S	K	H	L	Y	L	V	T	E	Y	M	S	K	G	S	L	V	D	Y	L	R	S	R	G	R	Q	H	I	T	K	K	D	Q	I	I	F	A	Y	D	T	A	S	G	M	E	Y	L	E	A	K	K	V	V	H	R	D	L	A	A	R	N	V	L	I	S	E	D
Query Conservation										.	.	.	.
Alig confidence										.	.	.	.													.													.
Template Conservation																										.													.
Template Sequence		P	K	Y	W	G	S	G	L	H	D	K	N	G	K	S	Y	R	F	M	I	M	D	R	F	.	G	S	D	L	Q	K	I	Y	E	A	N	A	.	K	R	F	S	R	K	T	V	L	Q	L	S	L	R	I	L	D	I	L	E	Y	I	H	E	H	E	Y	V	H	G	D	I	K	A	S	N	L	L	L	N	Y	K
Template Known Secondary structure													T	T												.											T	T	.	T																							T	T	T	B			S				G	G	G					T	T
Template Predicted Secondary structure																										.													.
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.		.	.	.	.	.	140	.	.	.	.	.	.		.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
		601	.	.	.			.	.	.	.	.	610	.	.	.	.											.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.
Predicted Secondary structure						.	.											.	.	.	.	.	.	.	.	.	.
Query SS confidence						.	.											.	.	.	.	.	.	.	.	.	.
Query Sequence		C	V	A	K	.	.	V	S	D	F	G	L	A	R	E	E	.	.	.	.	.	.	.	.	.	.	C	Y	N	L	D	V	G	K	L	P	I	K	W	T	A	P	E	A	L	K	N	G	R	F	S	N	K	S	D	M	W	S	F	G	I	L	L	W	E	I	Y	S	F	G	R	V	P	Y	P	R	I	P	L	A
Query Conservation						.	.											.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.											.	.	.	.	.	.	.	.	.	.																																											.
Template Conservation																																																																						.
Template Sequence		N	P	D	Q	V	Y	L	V	D	Y	G	L	A	Y	R	Y	C	P	E	G	V	H	K	E	Y	K	E	D	P	K	R	C	H	D	G	T	I	E	F	T	S	I	D	A	H	N	G	V	A	P	S	R	R	G	D	L	E	I	L	G	Y	C	M	I	Q	W	L	T	.	G	H	L	P	W	E	D	N	L	K	D
Template Known Secondary structure											G	G	G			B	S	S	S	T	T					S				S	S				S	S		T	T	T	S							T																						.	S	S		T	T	T	T	T	T	T
Template Predicted Secondary structure																																																																						.
Template SS confidence
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.		.	.	.	260	.	.	.	.	.	.	.
		669	670	.	.	.	.	.											.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.
Query Sequence		D	V	V	K	H	V	E	.	.	.	.	.	.	.	.	.	.	V	G	Y	K	M	E	A	P	E	G	C	P	P	E	I	Y	E	M	M	R	Q	A	W	D	L	N	P	A	K	R	P	T	F	A	E	L	K	V	K	L	Q	L	L	N	N	A	T	A
Query Conservation									.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	K	Y	V	R	D	S	K	I	R	Y	R	E	N	I	A	S	L	M	D	K	C	F	P	E	K	N	K	P	G	E	I	A	K	Y	M	E	T	V	K	L	L	D	Y	T	E	K	P	L	Y	E	N	L	R	D	I	L	L	Q	G	L	K	A	I	G
Template Known Secondary structure															T							T	T	S		S	S																T	T	T	T	S	S																	T	T
Template Predicted Secondary structure
Template SS confidence
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions