03/02/2013 23:20:24 : INFO  : Run start: Sun Feb  3 23:20:24 GMT 2013
03/02/2013 23:20:24 : INFO  : Initialised job
03/02/2013 23:20:24 : INFO  : Initialised job:
Sequence
>batch____
MNSHATATQNGQTTVVGHHRGFSQPSVTVAAAAATGSTAGDPWFLQTTGHQMPPTAPLRH
NKRPAPQPNAVLGAGSSGTAPGSAVGAVLLHQQQLSQSQPHIVPPSIPPHHHHHRENNVH
PIQAGAAAALHLSSHALNSHNLISSASNHSPKSPSQTQQQQQTTNQQQQQQQQQASHSIL
STFAPAPTVAAVQPAGSQSVAGTAAAVAAVAQQQQQQHLQLLANCPPGGAGLMSSSLNAA
QMGMHGAERALPPKSLALSGSQHGSNMLLHTAPQPPQASQPAAVVGVSGSGSAGMSTSLH
SFDINGVTAGSGVNASSAWSSGSTTAMNHASLSPTALAPQQGRSRCEVKLNAMPWFHGSI
TRDEAEHLLQPREDGLFLVRESTNFPGDYTLCVCFQSKVEHYRVKYLENKLTIDDEEYFE
NLGQLVAHYEADADGLCTQLIKCLPKLGKQEFCINSKDFVDKGWVIPEAELQLRESIGKG
EFGDVMLGILRNEKVAVKMLKDEGAVQKFLAEASVMTTLEHDNLVKFIGLVFTSKHLYLV
TEYMSKGSLVDYLRSRGRQHITKKDQIIFAYDTASGMEYLEAKKVVHRDLAARNVLISED
CVAKVSDFGLAREECYNLDVGKLPIKWTAPEALKNGRFSNKSDMWSFGILLWEIYSFGRV
PYPRIPLADVVKHVEVGYKMEAPEGCPPEIYEMMRQAWDLNPAKRPTFAELKVKLQLLNN
ATA

03/02/2013 23:20:24 : INFO  : Checked sequence
03/02/2013 23:20:24 : INFO  : Finding homologues with PSI-BLAST
03/02/2013 23:20:24 : INFO  : PSI-BLAST 3 iterations
03/02/2013 23:27:30 : INFO  : PSI-BLAST 5 iterations
03/02/2013 23:34:10 : INFO  : Finished PSI-BLAST
03/02/2013 23:34:10 : INFO  : Running Buildali to generate a3m file
04/02/2013 01:47:18 : INFO  : Converting to HMM
04/02/2013 01:48:03 : INFO  : Calibrating HMM
04/02/2013 01:48:18 : INFO  : Searching HMM database
04/02/2013 02:00:24 : INFO  : Finished buildali
04/02/2013 02:00:24 : INFO  : Predicting secondary structure
04/02/2013 02:00:25 : INFO  : Predicted secondary structure (PSI-Pred)
04/02/2013 02:00:25 : INFO  : Predicting Disordered regions
04/02/2013 02:00:25 : INFO  : Predicted Disorder (Disopred)
04/02/2013 02:00:25 : INFO  : Running memsat_svm check
04/02/2013 02:03:08 : INFO  : Globular protein
04/02/2013 02:03:08 : INFO  : Predicted Transmembrane (memsat_svm) ID '2b5d9072c0ae0684'
04/02/2013 02:03:08 : INFO  : Initialising fold library search
04/02/2013 02:03:08 : INFO  : Initialised search input
04/02/2013 02:03:08 : INFO  : Building Ensemble models
04/02/2013 02:03:09 : INFO  : Building hh.c1k9aB_.model.1.pdb
04/02/2013 02:03:09 : INFO  : Building c2fo0A_.1.pdb
04/02/2013 02:03:10 : INFO  : Building c1k9aB_.2.pdb
04/02/2013 02:03:10 : INFO  : Building c1oplA_.3.pdb
04/02/2013 02:03:11 : INFO  : Building c1y57A_.4.pdb
04/02/2013 02:03:11 : INFO  : Building c2h8hA_.5.pdb
04/02/2013 02:03:11 : INFO  : Building c2c0iA_.6.pdb
04/02/2013 02:03:12 : INFO  : Building c4fl2A_.7.pdb
04/02/2013 02:03:12 : INFO  : Building c2ozoA_.8.pdb
04/02/2013 02:03:13 : INFO  : Building c2j0kB_.9.pdb
04/02/2013 02:03:13 : INFO  : Building c3nyoB_.10.pdb
04/02/2013 02:03:14 : INFO  : Building c3pfqA_.11.pdb
04/02/2013 02:03:14 : INFO  : Building c3cblA_.12.pdb
04/02/2013 02:03:14 : INFO  : Building c2acxB_.13.pdb
04/02/2013 02:03:15 : INFO  : Building c3qa8H_.14.pdb
04/02/2013 02:03:16 : INFO  : Building c1ym7C_.15.pdb
04/02/2013 02:03:16 : INFO  : Building c3c4wB_.16.pdb
04/02/2013 02:03:17 : INFO  : Building c3qa8A_.17.pdb
04/02/2013 02:03:18 : INFO  : Building c3c4yA_.18.pdb
04/02/2013 02:03:18 : INFO  : Building d1qcfa3.19.pdb
04/02/2013 02:03:18 : INFO  : Building d1opja_.20.pdb
04/02/2013 02:03:21 : INFO  : Finished HH model building
04/02/2013 02:03:21 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
04/02/2013 02:03:24 : INFO  : html domain output complete ID '2b5d9072c0ae0684'
04/02/2013 03:28:07 : INFO  : Run end  : Mon Feb  4 03:28:07 GMT 2013
