Phyre 2 alignment of Q7KSQ2 with c2xp1A_

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Job Description | Q7KSQ2
Confidence | 93.63% | Date | Tue Jan 22 11:45:00 GMT 2013
Rank | 438 | Aligned Residues | 78
% Identity | 21% | Template | c2xp1A_
PDB info | PDB header:transcription | Chain: A: PDB Molecule:spt6; | PDBTitle: structure of the tandem sh2 domains from antonospora locustae2 transcription elongation factor spt6
Resolution | 2.20 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 349 | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420 | . | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | K | L | N | A | M | P | W | F | H | G | S | I | T | R | D | E | A | E | H | L | L | Q | P | R | E | D | G | L | F | L | V | R | E | S | T | N | F | P | G | D | Y | T | L | C | V | C | F | Q | S | K | V | E | H | Y | R | V | K | Y | L | E | N | K | L | T | I | D | D | E | E | Y | F | E | N | L | G | Q | L | V | A | H
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | R | F | Y | K | H | P | L | F | K | . | N | F | N | V | T | E | S | E | N | Y | L | R | S | . | S | T | D | D | F | L | I | R | K | G | . | S | R | H | G | Y | C | V | L | V | I | K | F | A | S | D | V | F | V | H | M | K | I | E | E | H | S | E | H | Y | T | C | S | N | K | H | F | E | D | I | D | E | V | I | S | V
Template Known Secondary structure |  | G | G | G | G | S | T | T |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  | . | S | S |  |  |  |  |  |  |  |  | . | S | S | T | T |  |  |  |  |  |  |  |  |  | T | T |  |  |  |  |  |  |  |  |  |  | S | S |  |  |  |  | T | T |  |  |  | S | S |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 788 | . | 790 | . | . | . | . | . | . |  | . | . | . | 800 | . | . | . | . | . | . | . | . | . |  | 810 | . | . | . | . | . | . | . | . | . |  | 820 | . | . | . | . | . | . | . | . | . | 830 | . | . | . | . | . | . | . | . | . | 840 | . | . | . | . | . | . | . | . | . | 850 | . | . | . | . | . | . | . | . | . | 860 | . | . | . | .
|  | 429
Predicted Secondary structure |  |
Query SS confidence |  |
Query Sequence |  | Y
Query Conservation |  |
Alig confidence |  |
Template Conservation |  |
Template Sequence |  | Y
Template Known Secondary structure |  | T
Template Predicted Secondary structure |  |
Template SS confidence |  |
|  | 865

Download: | Text version | FASTA version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys |
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