Job Description Q9V9J3 Confidence 100.00% Date Tue Jan 22 11:49:10 GMT 2013 Rank 49 Aligned Residues 259 % Identity 21% Template c4dn5A_ PDB info PDB header:transferase Chain: A: PDB Molecule:mitogen-activated protein kinase kinase kinase 14; PDBTitle: crystal structure of nf-kb-inducing kinase (nik) Resolution 2.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.		.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure																															.
Query SS confidence																															.
Query Sequence		Q	W	E	I	D	R	T	S	L	K	F	V	R	K	L	G	S	G	Q	F	G	D	V	W	E	G	L	W	N	.	N	T	T	P	V	A	I	K	T	L	K	S	G	T	M	D	P	K	D	F	L	A	E	A	Q	I	M	K	K	L	R	H	T	K	L	I	Q	L	Y	A	V	C	T	V	E	E	P	I	Y	I
Query Conservation																															.
Alig confidence																															.																		.	.	.	.
Template Conservation																																																	.	.	.	.
Template Sequence		E	Y	R	E	E	V	H	W	A	T	H	Q	L	R	L	G	R	G	S	F	G	E	V	H	R	M	E	D	K	Q	T	G	F	Q	C	A	V	K	K	V	R	L	E	V	F	R	A	.	.	.	.	E	E	L	M	A	C	A	G	L	T	S	P	R	I	V	P	L	Y	G	A	V	R	E	G	P	W	V	N	I
Template Known Secondary structure		B			B	T	T	T					S	S		S				S	S									T	T	T											T	T	T			T	.	.	.	.					T	T	S	S				T	T	B										T	T
Template Predicted Secondary structure																																																	.	.	.	.
Template SS confidence
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.					.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.		.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure																																																																			.
Query SS confidence																																																																			.
Query Sequence		I	T	E	L	M	K	H	G	S	L	L	E	Y	L	Q	A	I	A	G	K	G	R	S	L	K	M	Q	T	L	I	D	M	A	A	Q	I	A	A	G	M	A	Y	L	E	S	Q	N	Y	I	H	R	D	L	A	A	R	N	V	L	V	G	D	G	N	I	.	V	K	I	A	D	F	G	L	A	R	L	I	K	E
Query Conservation																																																																			.
Alig confidence																.	.	.	.																																																.												.	.	.
Template Conservation																.	.	.	.																																																												.	.	.
Template Sequence		F	M	E	L	L	E	G	G	S	L	G	Q	L	V	.	.	.	.	K	E	Q	G	C	L	P	E	D	R	A	L	Y	Y	L	G	Q	A	L	E	G	L	E	Y	L	H	S	R	R	I	L	H	G	D	V	K	A	D	N	V	L	L	S	S	D	G	S	H	A	A	L	C	D	F	G	H	A	V	C	.	.	.
Template Known Secondary structure							T	T		B						.	.	.	.				S	S																							T	T				S			S	G	G	G					T	T	S									T	T				.	.	.
Template Predicted Secondary structure																.	.	.	.																																																												.	.	.
Template SS confidence
		468	.	470	.	.	.	.	.	.	.	.	.	480	.					.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540
		398	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.			.	.	.	.	.	.	470	.	.	.	.	.
Predicted Secondary structure																																																																				.	.
Query SS confidence																																																																				.	.
Query Sequence		D	E	Y	E	A	R	V	G	A	R	F	P	I	K	W	T	A	P	E	A	A	N	Y	S	K	F	S	I	K	S	D	V	W	S	F	G	I	L	L	T	E	L	V	T	Y	G	R	I	P	Y	P	G	M	T	N	A	E	V	L	T	Q	V	E	H	G	Y	.	.	R	M	P	Q	P	P	N	C	E	P	R	L
Query Conservation																																																																				.	.
Alig confidence		.	.	.	.	.	.																																							.																						.	.
Template Conservation		.	.	.	.	.	.																																							.
Template Sequence		.	.	.	.	.	.	L	Q	I	P	G	T	E	T	H	M	A	P	E	V	V	L	G	R	S	C	D	A	K	V	D	V	W	S	S	C	C	M	M	L	H	M	L	N	.	G	C	H	P	W	T	Q	F	F	R	G	P	L	C	L	K	I	A	S	E	P	P	P	V	R	E	I	P	P	S	C	A	P	L	T
Template Known Secondary structure		.	.	.	.	.	.					S		G	G	G							T	T					T																	.	S	S		T	T	T	T	T			S									S			G	G	G	G	S		T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.																																							.
Template SS confidence
								541	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.		.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.
		476	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	E	I	M	L	E	C	W	H	K	D	P	M	R	R	P	T	F	E	T	L	Q	W	K	L	E	D	F	Y	T	S	D	Q	S	D	Y	K	E	A	Q	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	Q	A	I	Q	E	G	L	R	K	E	P	I	H	R	V	S	A	A	E	L	G	G	K	V	N	R	A	L	Q	Q	V	G	G	L	K	S	P	W	R	G
Template Known Secondary structure									S		S	S	T	T	S	S																		T	S	S		S		S	S
Template Predicted Secondary structure
Template SS confidence
		627	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions