Job Description Q9V9J3 Confidence 100.00% Date Tue Jan 22 11:49:10 GMT 2013 Rank 20 Aligned Residues 240 % Identity 26% Template c3qa8H_ PDB info PDB header:immune system, signaling protein Chain: H: PDB Molecule:mgc80376 protein; PDBTitle: crystal structure of inhibitor of kappa b kinase beta Resolution 3.60 Å

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		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.		.	.	.	.	.	.	.	280			.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.							310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.									.	.																														.	.	.	.	.	.
Query SS confidence																										.									.	.																														.	.	.	.	.	.
Query Sequence		K	F	V	R	K	L	G	S	G	Q	F	G	D	V	W	E	G	L	W	N	N	T	T	P	.	V	A	I	K	T	L	K	S	.	.	G	T	M	D	P	K	D	F	L	A	E	A	Q	I	M	K	K	L	R	H	T	K	L	I	Q	L	Y	A	V	.	.	.	.	.	.	C	T	V	E	E	P	I	Y	I	I
Query Conservation																										.									.	.																														.	.	.	.	.	.
Alig confidence																										.									.	.																														.	.	.	.	.	.
Template Conservation
Template Sequence		E	M	K	E	R	L	G	T	G	G	F	G	Y	V	L	R	W	I	H	Q	D	T	G	E	Q	V	A	I	K	Q	C	R	Q	E	L	S	P	K	N	R	E	R	W	C	L	E	I	Q	I	M	K	K	L	N	H	P	N	V	V	S	A	R	E	V	P	D	G	L	Q	K	L	A	P	N	D	L	P	L	L	A
Template Known Secondary structure									B		S	S	S	B							T	T	T	T										S																						B	T	T	B								T	T	T					T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.				.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure																																																																		.	.	.
Query SS confidence																																																																		.	.	.
Query Sequence		T	E	L	M	K	H	G	S	L	L	E	Y	L	Q	A	I	A	G	K	G	R	S	L	K	M	Q	T	L	I	D	M	A	A	Q	I	A	A	G	M	A	Y	L	E	S	Q	N	Y	I	H	R	D	L	A	A	R	N	V	L	V	G	D	G	N	I	.	.	.	V	K	I	A	D	F	G	L	A	R	L	I	K
Query Conservation																																																																		.	.	.
Alig confidence																							.																																											.	.	.
Template Conservation																							.
Template Sequence		M	E	Y	C	E	G	G	D	L	R	K	Y	L	N	Q	F	E	N	C	C	G	.	L	K	E	G	P	I	R	T	L	L	S	D	I	S	S	A	L	R	Y	L	H	E	N	R	I	I	H	R	D	L	K	P	E	N	I	V	L	Q	P	G	P	Q	R	L	I	H	K	I	I	D	L	G	Y	A	K	E	L	D
Template Known Secondary structure						S	S		B							S	S	S		T	T		.			S	S																			T	T	B							S	T	T							S	S	S							S						B	T	T
Template Predicted Secondary structure																							.
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.		.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.														.	.
Predicted Secondary structure																																																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	D	E	Y	E	A	R	V	G	A	R	F	P	I	K	W	T	A	P	E	A	A	N	Y	S	K	F	S	I	K	S	D	V	W	S	F	G	I	L	L	T	E	L	V	T	Y	G	R	I	P	Y	P	G	M	T	N	A	E	V	L	T	Q	V	E	H	.	.	.	.	.	.	.	.	.	.	.	.	.	G	Y
Query Conservation																																																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.																																.																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.																																.
Template Sequence		Q	G	E	L	C	T	E	F	V	G	T	L	.	.	Q	Y	L	A	P	E	L	L	E	Q	K	K	Y	T	V	T	V	D	Y	W	S	F	G	T	L	A	F	E	C	I	T	.	G	F	R	P	F	L	P	N	W	Q	P	V	Q	W	H	G	K	V	R	I	V	V	Y	D	D	L	T	G	A	V	K	F	S	S
Template Known Secondary structure		S									S			.	.	T	T		S	S		S	S			S			S	T	T															S	.	S			S			S	S						S	S	T	T					S					S	S	S					S
Template Predicted Secondary structure														.	.																																.
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.			.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.		.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
		464	.	.	.	.	.	470	.					.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.
Predicted Secondary structure										.	.	.	.
Query SS confidence										.	.	.	.
Query Sequence		R	M	P	Q	P	P	N	C	.	.	.	.	E	P	R	L	Y	E	I	M	L	E	C	W	H	K	D	P	M	R	R	P	T
Query Conservation										.	.	.	.
Alig confidence										.	.	.	.
Template Conservation
Template Sequence		V	L	P	T	P	N	H	L	S	G	I	L	A	G	K	L	E	R	W	L	Q	C	M	L	M	W	H	Q	R	T	D	P	Q
Template Known Secondary structure		S	S			S					G	G	G												S		S	S					T	T
Template Predicted Secondary structure
Template SS confidence
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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