Job Description Q9V9J3 Confidence 100.00% Date Tue Jan 22 11:49:10 GMT 2013 Rank 290 Aligned Residues 223 % Identity 23% Template c3kn5B_ PDB info PDB header:transferase Chain: B: PDB Molecule:ribosomal protein s6 kinase alpha-5; PDBTitle: crystal structure of the c-terminal kinase domain of msk1 in complex2 with amp-pnp Resolution 2.40 Å

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		245	.	.	.	.	250	.				.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.		.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.																	.																																	.
Query SS confidence									.	.	.																	.																																	.
Query Sequence		R	T	S	L	K	F	V	.	.	.	R	K	L	G	S	G	Q	F	G	D	V	W	E	G	L	W	.	N	N	T	T	P	V	A	I	K	T	L	K	S	G	T	M	D	P	K	D	F	L	A	E	A	Q	I	M	K	K	L	R	.	H	T	K	L	I	Q	L	Y	A	V	C	T	V	E	E	P	I	Y	I	I
Query Conservation									.	.	.																	.																																	.
Alig confidence									.	.	.																	.																.	.																.
Template Conservation																																												.	.
Template Sequence		Y	Q	H	Y	D	L	D	L	K	D	K	P	L	G	E	G	S	F	S	I	C	R	K	C	V	H	K	K	S	N	Q	A	F	A	V	K	I	I	S	K	R	M	.	.	E	A	N	T	Q	K	E	I	T	A	L	K	L	C	E	G	H	P	N	I	V	K	L	H	E	V	F	H	D	Q	L	H	T	F	L	V
Template Known Secondary structure									S	S	S			S	B			T	T									T	T	T	T										G	G	G	.	.														T	T	T		T	T	B										S	S
Template Predicted Secondary structure																																												.	.
Template SS confidence
		420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.			.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	E	L	M	K	H	G	S	L	L	E	Y	L	Q	A	I	A	G	K	G	R	S	L	K	M	Q	T	L	I	D	M	A	A	Q	I	A	A	G	M	A	Y	L	E	S	Q	N	Y	I	H	R	D	L	A	A	R	N	V	L	V	G	D	G	N	I	V	K	I	A	D	F	G	L	A	R	L	I	K	E	D	E
Query Conservation
Alig confidence															.	.	.	.																																											.																		.	.	.
Template Conservation															.	.	.	.																																											.																		.	.	.
Template Sequence		M	E	L	L	N	G	G	E	L	F	E	R	I	.	.	.	.	K	K	K	K	H	F	S	E	T	E	A	S	Y	I	M	R	K	L	V	S	A	V	S	H	M	H	D	V	G	V	V	H	R	D	L	K	P	E	N	L	L	F	.	T	D	L	E	I	K	I	I	D	F	G	F	A	R	L	K	P	.	.	.
Template Known Secondary structure							S		B						.	.	.	.		T		S			B																					T	T								G	G	G				.											T	T						.	.	.
Template Predicted Secondary structure															.	.	.	.																																											.																		.	.	.
Template SS confidence
		498	.	500	.	.	.	.	.	.	.	.	.	510					.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.		.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.
		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.								.	.	.	.	.	.	.	.	460	.	.				.	.	.	.	.	.	.
Predicted Secondary structure																																																						.	.	.	.	.	.	.												.	.	.
Query SS confidence																																																						.	.	.	.	.	.	.												.	.	.
Query Sequence		Y	E	A	R	V	G	A	R	F	P	I	K	W	T	A	P	E	A	A	N	Y	S	K	F	S	I	K	S	D	V	W	S	F	G	I	L	L	T	E	L	V	T	Y	G	R	I	P	Y	P	G	M	T	.	.	.	.	.	.	.	N	A	E	V	L	T	Q	V	E	H	G	.	.	.	Y	R	M	P	Q	P	P
Query Conservation																																																						.	.	.	.	.	.	.												.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.										.	.	.	.	.	.	.												.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	N	G	Y	D	E	S	C	D	L	W	S	L	G	V	I	L	Y	T	M	L	S	.	G	Q	V	P	F	Q	S	H	D	R	S	L	T	C	T	S	A	V	E	I	M	K	K	I	K	K	G	D	F	S	F	E	G	E	A	W	K
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						T																	.	S			T	T			S	S		S	S															T						S	T	T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.
Template SS confidence
																						574	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.		.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.
		470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	C	E	P	R	L	Y	E	I	M	L	E	C	W	H	K	D	P	M	R	R	P	T	F	E	T	L	Q	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	V	S	Q	E	A	K	D	L	I	Q	G	L	L	T	V	D	P	N	K	R	L	K	M	S	G	L	R	Y
Template Known Secondary structure		S																S	S	S									T	T
Template Predicted Secondary structure
Template SS confidence
		655	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions