Job Description Q9V9J3 Confidence 100.00% Date Tue Jan 22 11:49:10 GMT 2013 Rank 288 Aligned Residues 248 % Identity 23% Template c3begA_ PDB info PDB header:transferase/splicing Chain: A: PDB Molecule:serine/threonine-protein kinase srpk1; PDBTitle: crystal structure of sr protein kinase 1 complexed to its substrate2 asf/sf2 Resolution 2.90 Å

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		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.		.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300									.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure																									.																																	.	.	.	.	.	.	.	.															.	.
Query SS confidence																									.																																	.	.	.	.	.	.	.	.															.	.
Query Sequence		T	S	L	K	F	V	R	K	L	G	S	G	Q	F	G	D	V	W	E	G	L	W	N	.	N	T	T	P	V	A	I	K	T	L	K	S	G	T	M	D	P	K	D	F	L	A	E	A	Q	I	M	K	K	L	R	H	.	.	.	.	.	.	.	.	T	K	L	I	Q	L	Y	A	V	C	T	V	E	E	.	.
Query Conservation																									.																																	.	.	.	.	.	.	.	.															.	.
Alig confidence																									.																																	.	.	.	.	.	.	.	.															.	.
Template Conservation
Template Sequence		G	R	Y	H	V	I	R	K	L	G	W	G	H	F	S	T	V	W	L	S	W	D	I	Q	G	K	K	F	V	A	M	K	V	V	K	S	A	E	H	Y	T	E	T	A	L	D	E	I	R	L	L	K	S	V	R	N	S	D	P	N	D	P	N	R	E	M	V	V	Q	L	L	D	D	F	K	I	S	G	V	N
Template Known Secondary structure		T	T											S	S									S	S	S	S	S									S																				S	S		T	T		T	T	S	T	T	B										B		S	S
Template Predicted Secondary structure
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Predicted Secondary structure																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	I	Y	I	I	T	E	L	M	K	H	G	S	L	L	E	Y	L	Q	A	I	A	G	K	G	R	S	L	K	M	Q	T	L	I	D	M	A	A	Q	I	A	A	G	M	A	Y	L	E	S	Q	N	Y	I	H	R	D	L	A	A	R	N	V	L	V	G	D	G	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	T	H	I	C	M	V	F	E	V	L	G	H	H	L	L	K	W	I	I	K	S	N	Y	Q	G	L	P	L	P	C	V	K	K	I	I	Q	Q	V	L	Q	G	L	D	Y	L	H	T	K	C	R	I	I	H	T	D	I	K	P	E	N	I	L	L	S	V	N	E	Q	Y	I	R	R	L	A	A	E	A	A	G
Template Known Secondary structure			B												B								T	T	T	S																									S								S	G	G	G															T	T
Template Predicted Secondary structure
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
																382	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	I	V	K	I	A	D	F	G	L	A	R	L	I	K	E	D	E	Y	E	A	R	V	G	A	R	F	P	I	K	W	T	A	P	E	A	A	N	Y	S	K	F	S	I	K	S	D	V	W	S	F	G	I	L	L	T	E	L	V	T	Y	G	R	I	P	Y
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.																																.
Template Conservation																																									.	.	.	.																																.
Template Sequence		N	F	L	V	N	P	L	E	P	K	N	A	E	K	L	K	V	K	I	A	D	L	G	N	A	C	W	V	H	K	H	F	T	E	D	I	Q	T	R	.	.	.	.	Q	Y	R	S	L	E	V	L	I	G	S	G	Y	N	T	P	A	D	I	W	S	T	A	C	M	A	F	E	L	A	T	.	G	D	Y	L	F
Template Known Secondary structure				S			S	S		G	G	G	T	T	T									T	T				S	S			S		S			S		G	.	.	.	.	G	G								T					T																	.	S	S		S
Template Predicted Secondary structure																																									.	.	.	.																																.
Template SS confidence
		477	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.					.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.		.	.	.	550	.
		448	.	450	.	.	.	.	.	.	.	.	.	460	.	.																																																.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	G	M	T	N	A	E	V	L	T	Q	V	E	H	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	R	M	P	Q	P	P	N	C	E	P	R	L	Y	E	I	M	L
Query Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	P	H	S	G	E	E	Y	T	R	D	E	D	H	I	A	L	I	I	E	L	L	G	K	V	P	R	K	L	I	V	A	G	K	Y	S	K	E	F	F	T	K	K	G	D	L	K	H	I	T	K	L	K	P	W	G	L	F	E	V	L	V	E	K	Y	E	W	S	Q	E	E	A	A	G	F	T	D	F	L	L
Template Known Secondary structure							S	S	S																S							T	T		T	T					B		S	S	S	S	B	S	S			S													T	T				T	T					T
Template Predicted Secondary structure
Template SS confidence
		552	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.
		481	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	C	W	H	K	D	P	M	R	R	P	T	F	E	T	L	Q	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	M	L	E	L	I	P	E	K	R	A	T	A	A	E	C	L	R
Template Known Secondary structure				T		S	S	T	T	T	S								S
Template Predicted Secondary structure
Template SS confidence
		632	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions