Job Description Q9VPU1 Confidence 99.81% Date Tue Jan 22 11:34:19 GMT 2013 Rank 103 Aligned Residues 76 % Identity 24% Template c3or8A_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt6; PDBTitle: a tandem sh2 domain in transcription elongation factor spt6 Resolution 1.60 Å

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		445	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.		.	490	.	.	.	.	.	.	.	.	.	500	.									.	.	.	.	.	.	.	.	510	.	.	.	.	.
Predicted Secondary structure																																														.														.	.	.	.	.	.	.	.
Query SS confidence																																														.														.	.	.	.	.	.	.	.
Query Sequence		G	K	S	W	Y	Y	G	A	I	T	R	S	Q	C	D	T	V	L	N	G	H	G	H	D	G	D	F	L	I	R	D	S	E	T	N	M	G	D	Y	S	V	S	L	K	.	A	P	G	R	N	K	H	F	R	V	H	V	E	.	.	.	.	.	.	.	.	Q	N	M	Y	C	I	G	Q	R	K	F	H	S	L
Query Conservation																																														.														.	.	.	.	.	.	.	.
Alig confidence								.															.																							.														.	.	.	.	.	.	.	.
Template Conservation								.															.
Template Sequence		N	H	P	Y	Y	F	.	P	F	N	G	K	Q	A	E	D	Y	L	R	S	K	.	E	R	G	D	F	V	I	R	Q	S	S	R	G	D	D	H	L	A	I	T	W	K	L	D	K	D	L	F	Q	H	V	D	I	Q	E	L	E	K	E	N	P	L	A	L	G	K	V	L	V	V	E	G	Q	R	Y	H	D	L
Template Known Secondary structure				T	T			.												T	T	S	.		T	T								S	S		T	T										T	T											S		S	S	T	T	S			S					T	T				S	S
Template Predicted Secondary structure								.															.
Template SS confidence
		5	.	.	.	.	10		.	.	.	.	.	.	.	.	.	20	.	.	.	.		.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		516	.	.	.	520	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	Q	L	V	D	H	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	Q	I	I	V	E	Y
Template Known Secondary structure								T
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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