Return to main results Retrieve Phyre Job Id

Job DescriptionQ9VPU1
Confidence99.96%DateTue Jan 22 11:34:19 GMT 2013
Rank19Aligned Residues104
% Identity29%Templatec1x6cA_
PDB info PDB header:signaling proteinChain: A: PDB Molecule:tyrosine-protein phosphatase, non-receptor type PDBTitle: solution structures of the sh2 domain of human protein-2 tyrosine phosphatase shp-1
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   441........450.........460.........470.........480.........490.. .......500.........510.
Predicted Secondary structure 































.........






Query SS confidence 



















































. . . . . . . . .


















Query Sequence  PNLAGKSWYYGAITRSQCDTVLNGHGHDGDFLIRDSETNMGDYSVSLKAPGR. . . . . . . . . NKHFRVHVEQNMYCIGQRK
Query Conservation         

 
 
 
  

  
      
 



 
 
  
 
 

      .........
 
  
             
Alig confidence 



















































.........


















Template Conservation         



 


 


 

      
 



 
      
 


          
     
  
             
Template Sequence  GSSGSSGWYHGHMSGGQAETLLQAKGEPWTFLVRESLSQPGDFVLSVLSDQPKAGPGSPLRVTHIKVMCEGGRYTVGGLE
Template Known Secondary structure 

S






SS



SS
SSSTT
SSSTTS
TTSSSS
Template Predicted Secondary structure 






































Template SS confidence 















































































   1........10.........20.........30.........40.........50.........60.........70.........80
 
   512.......520.........530.........540.....
Predicted Secondary structure  .


















Query SS confidence  .

































Query Sequence  . FHSLDQLVDHYQRAPIYTNKQGEKLYLVRSLPKA
Query Conservation  .
     

  
                       
Alig confidence  .
















.















Template Conservation   
 

  

  
    
 .   
    
  
    
Template Sequence  TFDSLTDLVEHFKKTGIE. EASGAFVYLRQPYYSG
Template Known Secondary structure 
BSS
.
SSS







Template Predicted Secondary structure 







.











Template SS confidence 


































   81........90........ .100.........110....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions