Phyre 2 alignment of Q9VPU1 with c3u2aA_

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Job Description | Q9VPU1
Confidence | 35.34% | Date | Tue Jan 22 11:34:19 GMT 2013
Rank | 371 | Aligned Residues | 19
% Identity | 26% | Template | c3u2aA_
PDB info | PDB header:hydrolase | Chain: A: PDB Molecule:ggdef family protein; | PDBTitle: adaptor dependent degradation of a cell-cycle regulator reveals2 diversity in substrate architectures
Resolution | 1.70 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 454 | . | . | . | . | . | 460 | . | . | . | . | . | . | . | . | . | 470 | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | T | R | S | Q | C | D | T | V | L | N | G | H | G | H | D | G | D | F | L | I
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |
Template Sequence |  | D | R | A | Q | A | E | E | V | L | K | P | R | . | E | P | G | S | E | V | V
Template Known Secondary structure |  | G |  |  |  |  |  |  |  |  | S |  |  | . |  | T | T |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 68 | . | 70 | . | . | . | . | . | . | . | . | . |  | 80 | . | . | . | . | . | .

Download: | Text version | FASTA version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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