Phyre 2 alignment of Q9VPU1 with c2krsA_

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Job Description | Q9VPU1
Confidence | 95.04% | Date | Tue Jan 22 11:34:19 GMT 2013
Rank | 327 | Aligned Residues | 38
% Identity | 29% | Template | c2krsA_
PDB info | PDB header:structural genomics, unknown function | Chain: A: PDB Molecule:probable enterotoxin; | PDBTitle: solution nmr structure of sh3 domain from cpf_0587 (fragment2 415-479) from clostridium perfringens. northeast structural3 genomics consortium (nesg) target cpr74a.
Resolution | UNK

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 345 | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | F | E | K | G | D | R | L | E | I | V | D | R | P | A | S | D | P | D | W | Y | K | A | R | N | N | Q | G | Q | V | G | L | V | P | R | N | Y | L | Q | E | L | N | D
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | L | R | N | N | D | K | V | E | I | I | K | E | . | . | . | V | D | G | W | Y | E | I | R | F | . | N | G | K | V | G | Y | A | S | K | S | Y | I | T | I | V | N | E
Template Known Secondary structure |  |  |  | T | T |  |  |  |  |  |  |  |  | . | . | . |  | T | T |  |  |  |  |  |  | . | T | T |  |  |  |  |  |  | S | S | S |  |  |  | S | S | S
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 27 | . | . | 30 | . | . | . | . | . | . | . | . |  |  |  | . | 40 | . | . | . | . | . | . | . |  | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | .

Download: | Text version | FASTA version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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