Phyre 2 alignment of Q9VPU1 with c3pe0B_

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Job Description | Q9VPU1
Confidence | 98.11% | Date | Tue Jan 22 11:34:19 GMT 2013
Rank | 311 | Aligned Residues | 58
% Identity | 21% | Template | c3pe0B_
PDB info | PDB header:structural protein | Chain: B: PDB Molecule:plectin; | PDBTitle: structure of the central region of the plakin domain of plectin
Resolution | 2.95 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 319 | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | Y | A | M | A | E | N | V | L | D | I | V | V | A | L | Y | S | F | T | S | N | N | D | Q | E | L | S | F | E | K | G | D | R | L | E | I | V | D | R | P | A | S | D | P | D | W | Y | K | A | R | N | N | Q | G | Q | V | G | L | V | P | R | N | Y | L
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | P | R | H | P | A | H | P | R | L | P | L | L | A | V | C | D | Y | K | Q | V | . | . | . | E | V | T | V | H | K | G | D | E | C | Q | L | V | G | P | . | . | A | Q | P | S | H | W | K | V | L | S | S | S | G | S | E | A | A | V | P | S | V | C | F
Template Known Secondary structure |  | G | G | S | T | T |  |  |  |  |  |  |  |  |  | S |  |  |  |  | S | . | . | . | S |  |  |  |  | T | T |  |  |  |  |  |  |  |  | . | . |  | S | T | T |  |  |  |  |  |  | T | T | S |  |  |  |  |  |  | G | G | G |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 823 | . | . | . | . | . | . | 830 | . | . | . | . | . | . | . | . | . | 840 | . | . |  |  |  | . | . | . | . | . | . | . | 850 | . | . | . | . | . | . | . |  |  | . | . | 860 | . | . | . | . | . | . | . | . | . | 870 | . | . | . | . | . | . | . | . | . | 880

Download: | Text version | FASTA version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys |
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