Phyre 2 alignment of Q9VPU1 with c3pvlA_

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Job Description | Q9VPU1
Confidence | 97.69% | Date | Tue Jan 22 11:34:19 GMT 2013
Rank | 319 | Aligned Residues | 56
% Identity | 29% | Template | c3pvlA_
PDB info | PDB header:motor protein/protein transport | Chain: A: PDB Molecule:myosin viia isoform 1; | PDBTitle: structure of myosin viia myth4-ferm-sh3 in complex with the cen1 of2 sans
Resolution | 2.80 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 327 | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . |  |  |  | . | 360 | . | . | . | . | . | . | . | . |  | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | D | I | V | V | A | L | Y | S | F | T | S | N | N | D | Q | E | L | S | F | E | K | G | D | R | L | E | I | V | D | R | P | A | . | . | . | S | D | P | D | W | Y | K | A | R | N | . | N | Q | G | Q | V | G | L | V | P | R | N | Y | L | Q | E | L
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | K | Y | V | V | A | L | Q | D | N | . | . | P | N | S | G | F | L | S | F | A | K | G | D | L | I | I | L | D | H | D | T | G | E | Q | V | M | N | S | G | W | A | N | G | I | N | E | R | T | K | Q | R | G | D | F | P | T | D | C | V | Y | V | M
Template Known Secondary structure |  |  |  |  |  |  | S | S |  |  | . | . |  |  |  |  | B |  |  |  |  | T | T |  |  |  |  |  | S | S |  |  |  |  |  |  |  |  | S | S |  |  |  |  |  |  | T | T | T |  |  |  |  |  |  |  | G | G | G |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 1568 | . | 1570 | . | . | . | . | . | . |  |  | . | . | . | 1580 | . | . | . | . | . | . | . | . | . | 1590 | . | . | . | . | . | . | . | . | . | 1600 | . | . | . | . | . | . | . | . | . | 1610 | . | . | . | . | . | . | . | . | . | 1620 | . | . | . | . | . | . | .

Download: | Text version | FASTA version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys |
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