28/01/2013 21:50:45 : INFO  : Run start: Mon Jan 28 21:50:45 GMT 2013
28/01/2013 21:50:45 : INFO  : Initialised job
28/01/2013 21:50:45 : INFO  : Initialised job:
Sequence
>batch____
MLEHPQRFVRNIPDSSASSQQYPQQQQHPPQLPQHQNLNLNQNQNLNQNQIYQYRPQVPV
PVPGSPAHHQRHSSLSQQQQLHHHRTLSTASSCSAQHKSVTFGQPALDCGGNGSGSANGS
GSGNSSSGSAAGNAGTQSMAGNMKHGKSQDDVCYVVAKYDYAAQGAQELDLRKNERYLLL
DDSKHWWRVQNSRNQSGYVPSNYVKKEKPSLFDSIKKKVKKGSGSKTLPNCSPSRQVESP
TMSRRLPPDPAEAIGTAVVKYNYQAQQPDELSLTKGTRILILEKSNDGWWRGQSGNSVGW
FPSNYTTEDCDNDGEIHTYAMAENVLDIVVALYSFTSNNDQELSFEKGDRLEIVDRPASD
PDWYKARNNQGQVGLVPRNYLQELNDYLATPYRNASASAGNGNGGGSNGGAGGGGGNDSM
ERRNEGNKPAAQSSGQPIERPNLAGKSWYYGAITRSQCDTVLNGHGHDGDFLIRDSETNM
GDYSVSLKAPGRNKHFRVHVEQNMYCIGQRKFHSLDQLVDHYQRAPIYTNKQGEKLYLVR
SLPKANGT

28/01/2013 21:50:45 : INFO  : Checked sequence
28/01/2013 21:50:45 : INFO  : Finding homologues with PSI-BLAST
28/01/2013 21:50:45 : INFO  : PSI-BLAST 3 iterations
28/01/2013 21:53:52 : INFO  : PSI-BLAST 5 iterations
28/01/2013 21:57:46 : INFO  : Finished PSI-BLAST
28/01/2013 21:57:46 : INFO  : Running Buildali to generate a3m file
28/01/2013 22:12:56 : INFO  : Converting to HMM
28/01/2013 22:12:59 : INFO  : Calibrating HMM
28/01/2013 22:13:13 : INFO  : Searching HMM database
28/01/2013 22:24:08 : INFO  : Finished buildali
28/01/2013 22:24:08 : INFO  : Predicting secondary structure
28/01/2013 22:24:08 : INFO  : Predicted secondary structure (PSI-Pred)
28/01/2013 22:24:08 : INFO  : Predicting Disordered regions
28/01/2013 22:24:08 : INFO  : Predicted Disorder (Disopred)
28/01/2013 22:24:08 : INFO  : Running memsat_svm check
28/01/2013 22:26:21 : INFO  : Running memsat_svm full
28/01/2013 22:28:16 : INFO  : Predicted Transmembrane (memsat_svm) ID '1e0757b109763eb9'
28/01/2013 22:28:16 : INFO  : Initialising fold library search
28/01/2013 22:28:16 : INFO  : Initialised search input
28/01/2013 22:28:16 : INFO  : Building Ensemble models
28/01/2013 22:28:16 : INFO  : Building hh.c2fo0A_.model.1.pdb
28/01/2013 22:28:16 : INFO  : Building hh.c1k9aB_.model.2.pdb
28/01/2013 22:28:17 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/1e0757b109763eb9/hh.c1k9aB_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/1e0757b109763eb9/c1k9aB_.2.pdb
28/01/2013 22:28:17 : INFO  : Building hh.c1y57A_.model.3.pdb
28/01/2013 22:28:17 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/1e0757b109763eb9/hh.c1y57A_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/1e0757b109763eb9/c1y57A_.3.pdb
28/01/2013 22:28:17 : INFO  : Building hh.c1oplA_.model.4.pdb
28/01/2013 22:28:18 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/1e0757b109763eb9/hh.c1oplA_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/1e0757b109763eb9/c1oplA_.4.pdb
28/01/2013 22:28:18 : INFO  : Building hh.c2h8hA_.model.5.pdb
28/01/2013 22:28:18 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/1e0757b109763eb9/hh.c2h8hA_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/1e0757b109763eb9/c2h8hA_.5.pdb
28/01/2013 22:28:18 : INFO  : Building hh.c2ablA_.model.6.pdb
28/01/2013 22:28:18 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/1e0757b109763eb9/hh.c2ablA_.model.6.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/1e0757b109763eb9/c2ablA_.6.pdb
28/01/2013 22:28:18 : INFO  : Building hh.c1griA_.model.7.pdb
28/01/2013 22:28:19 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/1e0757b109763eb9/hh.c1griA_.model.7.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/1e0757b109763eb9/c1griA_.20.pdb
28/01/2013 22:28:19 : INFO  : Building hh.c2l3sA_.model.8.pdb
28/01/2013 22:28:19 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/1e0757b109763eb9/hh.c2l3sA_.model.8.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/1e0757b109763eb9/c2l3sA_.94.pdb
28/01/2013 22:28:19 : INFO  : Building c2fo0A_.1.pdb
28/01/2013 22:28:19 : INFO  : Building c1k9aB_.2.pdb
28/01/2013 22:28:20 : INFO  : Building c1y57A_.3.pdb
28/01/2013 22:28:21 : INFO  : Building c1oplA_.4.pdb
28/01/2013 22:28:21 : INFO  : Building c2h8hA_.5.pdb
28/01/2013 22:28:22 : INFO  : Building c2ablA_.6.pdb
28/01/2013 22:28:22 : INFO  : Building c2c0iA_.7.pdb
28/01/2013 22:28:22 : INFO  : Building c1x27F_.8.pdb
28/01/2013 22:28:23 : INFO  : Building c3nhnA_.9.pdb
28/01/2013 22:28:23 : INFO  : Building c1g83A_.10.pdb
28/01/2013 22:28:23 : INFO  : Building c2b3oA_.11.pdb
28/01/2013 22:28:24 : INFO  : Building c3ps5A_.12.pdb
28/01/2013 22:28:24 : INFO  : Building c2shpA_.13.pdb
28/01/2013 22:28:25 : INFO  : Building c2ci8A_.14.pdb
28/01/2013 22:28:25 : INFO  : Building c2eo6A_.15.pdb
28/01/2013 22:28:25 : INFO  : Building d2shpa2.16.pdb
28/01/2013 22:28:25 : INFO  : Building c2eo3A_.17.pdb
28/01/2013 22:28:26 : INFO  : Building c2lqnA_.18.pdb
28/01/2013 22:28:26 : INFO  : Building c1x6cA_.19.pdb
28/01/2013 22:28:26 : INFO  : Building c1griA_.20.pdb
28/01/2013 22:28:38 : INFO  : Finished HH model building
28/01/2013 22:28:38 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
28/01/2013 22:28:43 : INFO  : html domain output complete ID '1e0757b109763eb9'
28/01/2013 22:54:26 : INFO  : Run end  : Mon Jan 28 22:54:26 GMT 2013
