Job Description Q9VYM1 Confidence 99.50% Date Tue Jan 22 11:43:10 GMT 2013 Rank 98 Aligned Residues 77 % Identity 22% Template c3or8A_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt6; PDBTitle: a tandem sh2 domain in transcription elongation factor spt6 Resolution 1.60 Å

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		1316	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.		1360	.	.	.	.	.	.		.	.	.	1370	.	.	.	.	.	.	.	.					.	1380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																														.								.													.	.	.	.
Query SS confidence																																														.								.													.	.	.	.
Query Sequence		W	Y	H	G	A	I	T	R	I	E	A	E	T	T	L	R	P	L	S	E	G	S	F	L	V	R	N	C	E	S	T	K	Q	D	Y	S	L	S	L	K	G	A	K	G	.	F	M	H	M	R	I	Q	.	R	N	E	T	G	Q	Y	I	L	G	Q	F	.	.	.	.	S	R	P	F	E	T	V	P	E	M	I
Query Conservation																																														.								.													.	.	.	.
Alig confidence					.																																									.								.													.	.	.	.
Template Conservation					.
Template Sequence		Y	Y	F	.	P	F	N	G	K	Q	A	E	D	Y	L	R	S	K	E	R	G	D	F	V	I	R	Q	S	S	R	G	D	D	H	L	A	I	T	W	K	L	D	K	D	L	F	Q	H	V	D	I	Q	E	L	E	K	E	N	P	L	A	L	G	K	V	L	V	V	E	G	Q	R	Y	H	D	L	D	Q	I	I
Template Known Secondary structure		T			.												T	T	S		T	T								S	S		T	T										T	T											S		S	S	T	T	S			S					T	T				S	S
Template Predicted Secondary structure					.
Template SS confidence
		8	.	10		.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		1390	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	H	F	C
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	E	Y	L
Template Known Secondary structure				T
Template Predicted Secondary structure
Template SS confidence
		87	.	.	90

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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