Job Description Q9VYM1 Confidence 27.79% Date Tue Jan 22 11:43:10 GMT 2013 Rank 139 Aligned Residues 94 % Identity 13% Template c3ocmB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:putative membrane protein; PDBTitle: the crystal structure of a domain from a possible membrane protein of2 bordetella parapertussis Resolution 1.80 Å

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		1306	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360			.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.
Predicted Secondary structure																																																									.	.
Query SS confidence																																																									.	.
Query Sequence		D	V	T	I	P	L	E	R	Q	G	W	Y	H	G	A	I	T	R	I	E	A	E	T	T	L	R	P	L	S	E	G	S	F	L	V	R	N	C	E	S	T	K	Q	D	Y	S	L	S	L	K	G	A	K	G	F	.	.	M	H	M	R	I	Q	R	N	E	T	G	Q	Y	I	L	G	Q	F	S	R	P	F	E
Query Conservation																																																									.	.
Alig confidence																																																									.	.
Template Conservation
Template Sequence		S	I	X	T	P	R	T	D	V	S	W	V	N	I	D	D	D	A	A	T	I	R	Q	Q	L	T	A	A	P	H	S	F	F	P	V	C	R	G	S	L	D	E	V	V	G	I	G	R	A	K	D	L	V	A	D	L	I	T	E	G	R	V	R	R	N	R	L	R	D	P	I	I	V	H	E	S	I	G	I	L
Template Known Secondary structure				S			G	G	G						T	T	S												S			S						S	S	S	T	T	S																		S	S			G	G	G	S	B							G	G	G
Template Predicted Secondary structure
Template SS confidence
		336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.
		1384	.	.	.	.	.	1390	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	P	E	M	I	R	H	F	C	L	N	R	L	P	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	L	X	D	T	L	K	R	S	R	G	Q	L	V	L	V
Template Known Secondary structure											T	T
Template Predicted Secondary structure
Template SS confidence
		416	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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